Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag

Basic information

species Glycine max
transcript GLYMA08G18760.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGA-
    ||||||||||||||||||||||| || ||||||||||||||||| ||| | |  || || || |||||||| | ||| || ||||||||  | || ||         | || || || ||  || |      |   ||| | ||  |     | || | |      ||  ||  | |    |||| ||   | | ||  ||  || | | | ||   |  | ||  |   ||| || |    | |  | | |   | ||| |        
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacc-tcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    |||||||||||||||||||| ||||| || || ||| || | ||||||||||| || ||||| || |  || |  ||||| ||||||||| | || ||  |           | |   |   ||||     |   ||| | ||||   ||||    |  | ||| |     || ||   ||  |  | || ||||     | |  |||  |  |  || ||||||                            
TGTTGAGGAAGGTATTGTTGTTGGAGGTGGCTGTACGCTTTTGCGGCTTGCATCAAAAGTTGATGCCATTATAGAAACACTTGAGAATGATGAACAGAAGgtagg----------aaaacaaatgaaataa----tctttggttattgtttcatttc--atcctaggttc-----aaggcatttgttttctattgtcaat----aattaaaatttctttttggcttcaag---------------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 10
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    ||||||||||||||||||||||| || ||||||||| || | |||||| | || || || || ||||||||||  || || || || ||  | || || |                  | | ||| |    | ||        || ||   |||      || ||  || ||  |  |   ||  ||| | | |  |||||||          |  |||  | | | | |                       
CGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGCTTGCAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaa----------------aacaaaatctgcaatccc--------gtaattcatttgaaagaggatggaggcaacagagcacaacc-ttgctat-aggttcaactatggctgacattctgaactgacattag-----------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    ||||||||||| ||||| |||||||| || || ||| |||| ||||||||||| || |||||||| |  || | |||||| || |||||| | || ||  ||     | || |  |    | ||   | | | | |     ||     || || | ||||   |||  | |       |||  | |  ||| |||                                                          
AGTCGAGGAAGGTATCGTTGTAGGTGGTGGCTGTACCCTTTTGAGGCTTGCATCAAAAGTTGATGCAATTATAGAGACCCTTGAGAACGATGAACAGAAGgtaggtttgaaagtttagtttctaaaaaagaatgctactttttgatta----atgttgtattttatatgcccgaa-------ctgtttttcctttacaag---------------------------------------------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G095252_T02 (Zea mays), 5'ss of exon 5
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    ||||||||||||||||||||||| || ||||| ||| || | |||||| | || || ||||| ||||||||||  || || || |||||  | || || ||      || ||  || ||   || |  |||   ||  |        |  || | | || | ||  |     |  | |   | |    ||                                                               
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGATGCACCCTTTTGCGGCTTGCAGCTAAAGTCGATGCCATCAAGGATACACTGGAGAACGATGAGCAGAAGgtaagaacaaaatctgtgattgattaaaaa-gagtagactacagagcagccttgttataggttcgagta-taactgacacgctgaagtaccattag-------------------------------------------------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    |||||||||||||| |||||||||||||||||||| ||  | |||||||||||||| ||||| |||||||||| |||||| |||||||||||||| |||| |          | ||  |||   |  || |||  || |  |||     ||  |  |  ||  |  |     ||  |||   || | |                                                                 
TGTTGAGGAAGGTATTGTCGTTGGTGGTGGTTGCACTCTGCTCCGGCTTGCATCAAAGGTCGATGCCATCAAGGATACCCTTGAAAATGATGAAGAAAAGgtgattgg------caaaatcaagaattttgaaattttttgcaaattgc----ttgctcttactgcattttcaactat-ttcccatctctag-----------------------------------------------------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: AT1G55490.1 (Arabidopsis thaliana), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag
    ||||||||||||||||||||||||||||||||||| ||  | ||||| || ||||| ||||| || || |  |  |||||||||||||||||||| || | ||| | |  |  |      ||| | |||   || || |  ||  | | | | |   ||||    |||   | | |   |                                                                         
TGTCGAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTGCTTCGTCTTGCTTCCAAGGTTGATGCCATTAAAGCCACGCTTGATAATGATGAAGAAAAGgtaaatcaatcaagtcttc-----agattttaa--ctcatgaacctt-cggtttctctaactttg----ctgatgattccctttag-----------------------------------------------------------------------

upper sequence: GLYMA08G18760.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 11
----GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGA-
    |||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||||| |||||||| |  |||||||||||||| ||||| ||||     ||   | | ||  ||||||      |  || |  | ||  | |||   |      |  ||||  |  ||   ||||      |    |||    | |||   |   | | | || | ||    | ||| | |  || ||||  ||||||       
TGTTGAGGAAGGGATTGTTGTAGGTGGTGGGTGCACTCTCCTGAGACTTGCCTCAAAGGTGGATGCCATCAAGGACACGCTTGATAATGATGAGGAAAAGgtgatacttgtggctgtgttcaatatgggatttgtccaa-taccttgagttttggttttcccaatagtttgaatcatgctgaatgtgttcaaaatgtgtcaatatattggccaggatatagtgtttatcctcttaaagtggacttgaattgattgcag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208281737|gb|GE077693.1|GE077693
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208281737|gb|GE077693.1|GE077693
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16278312|gb|BI942837.1|BI942837
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16278312|gb|BI942837.1|BI942837
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|298191386|gb|HO038865.1|HO038865
EST:     GATAATGATGAAGAAAAAGTCGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|298191386|gb|HO038865.1|HO038865
EST:     GATAATGATGAAGAAAAAGTCGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16344875|gb|BI970470.1|BI970470
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16344875|gb|BI970470.1|BI970470
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|209702280|gb|BW677975.1|BW677975
EST:     ATAATGATG-AGAAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: ATAATGATGAAG-AAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|209702280|gb|BW677975.1|BW677975
EST:     ATAATGATG-AGAAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: ATAATGATGAAG-AAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|17964146|gb|BM270885.1|BM270885
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|17964146|gb|BM270885.1|BM270885
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|7685797|gb|AW756445.1|AW756445
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|7685797|gb|AW756445.1|AW756445
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16278884|gb|BI943144.1|BI943144
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16278884|gb|BI943144.1|BI943144
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|6718933|gb|AW306580.1|AW306580
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|6718933|gb|AW306580.1|AW306580
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16282149|gb|BI944863.1|BI944863
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16282149|gb|BI944863.1|BI944863
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16282846|gb|BI945236.1|BI945236
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16282846|gb|BI945236.1|BI945236
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16281476|gb|BI944507.1|BI944507
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16281476|gb|BI944507.1|BI944507
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|7639932|gb|AW734243.1|AW734243
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|7639932|gb|AW734243.1|AW734243
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|209698543|gb|BW652409.1|BW652409
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|209698543|gb|BW652409.1|BW652409
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208026723|gb|GD823525.1|GD823525
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208026723|gb|GD823525.1|GD823525
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208072209|gb|GD870225.1|GD870225
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208072209|gb|GD870225.1|GD870225
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208046514|gb|GD849098.1|GD849098
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|208046514|gb|GD849098.1|GD849098
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|151401056|gb|EV270870.1|EV270870
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|151401056|gb|EV270870.1|EV270870
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16279729|gb|BI943586.1|BI943586
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGC-AAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|16279729|gb|BI943586.1|BI943586
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGC-AAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|8402244|gb|BE057878.1|BE057878
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|8402244|gb|BE057878.1|BE057878
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|27427470|gb|CA938990.1|CA938990
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|27427470|gb|CA938990.1|CA938990
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|20449400|gb|BQ253524.1|BQ253524
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|20449400|gb|BQ253524.1|BQ253524
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|120534219|gb|EH262352.1|EH262352
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|120534219|gb|EH262352.1|EH262352
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|6227700|gb|AW156299.1|AW156299
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|6227700|gb|AW156299.1|AW156299
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|254322415|gb|GR837829.1|GR837829
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|254322415|gb|GR837829.1|GR837829
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAG-T-GA-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|151412595|gb|EV282407.1|EV282407
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
EST: gi|151412595|gb|EV282407.1|EV282407
EST:     GATAATGATGAAGAAAAAGTTGGAG                         CTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG
genomic: GATAATGATGAAGAAAAAGT-G-A-gtcatttatt ... caggttggagCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAAGGTATTGTTGTTGGTGGTGGTTGCACTCTTCTGAGACTTGCATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAGTGAgtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcaggttggag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA