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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca...

Basic information

species Glycine max
transcript GLYMA08G17810.5
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 8
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
 |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||||| | || | ||  |||   |     | | | |   | ||  |||   |  ||         ||||   ||      || | |                
ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGGgtatgtcttgtag-gtgcttctgtttctatttccggaacatccttactgagttac--------tgactgattcgggggttgcag----------------

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G382240_T01 (Zea mays), 5'ss of exon 11
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttca-agttt---atgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
 |||||||| ||||||||||||||||||||  ||||||| ||||| |||||| |||| ||||||||   | |    | ||   || |  |||||   |    ||||||| |||  ||    |  || |  |   |  |  |                          
ATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcag-------------------------

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 10
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
 |||||||| ||||||||||||||||||||  ||||||| ||||| |||||| |||| ||||||||   || |   ||| || | |     ||    | |  | || |||    ||| |  |  ||| |   |||     ||   || |    ||        
ATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg---catccc-tgttgtacttgcttagtttagaaatatc---ctaaatagttaataattggttccgg-atcttggacttgcag--------

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 10
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttca-agttt---atgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
 |||||||| |||||||| |||||||||||  ||||||| ||||| |||||| |||| ||||||||   | |    | ||   || |  |||||   |    ||||||| |||  ||    |  || |  |   |  |  |                          
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcag-------------------------

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G850355_T04 (Zea mays), 5'ss of exon 9
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatt-tcaagttta---tgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
 |||||||| |||||||| |||||||||||  ||||||| ||||| |||||| |||| ||||||||   | |    | ||   ||    ||||||       ||||||| |||  ||    |  || |  |   |  |  |  ||| | || | | |          
ATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtattgcaacccacttgtagttgcttagtttaaaacatcctaaatagttactaattggttctgcatcttggacttgcagatatgaggggcaaatttcctc----

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: AT1G79210.1 (Arabidopsis thaliana), 5'ss of exon 10
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
||||||||| |||||||| |||||||||||  | ||||| |||||||||||  ||||||||||||  |  |       |   |    || || ||  |||  ||    |  |    | |||       |    | ||||      | ||  ||   ||     
GTACACAGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGGgtgagcat-------ttttaccaaaacttaatttactttatttcca-gagttcagaatttctcaaaagcctataacctccgtg-tcttttcacag-----

upper sequence: GLYMA08G17810.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 9
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgta---ggactaggagcatgc---catttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
|||||| ||||||||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||   | |     | | |     | ||| || || |   |   |||  ||  ||||||||     ||| | ||  |  |     |  |  |   |  |  |  | 
GTACACTGATGATATGGAACTTGATGATGCTGTCCACACAGCTATTTTGACACTCAAGGAGGGgtatatgcatcttaaacttcttttcttttaaatttcagctaacgaatgtttg-aaaactat----caaaaggcacatcaagaagctttgaacttatctgttgttc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285560|gb|AW598047.1|AW598047
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|193556539|gb|FK515192.1|FK515192
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGTGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|193426258|gb|FK389033.1|FK389033
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCA
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCA
EST: gi|6719574|gb|AW307221.1|AW307221
EST:     AGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: AGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31473230|gb|CD415258.1|CD415258
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|151393662|gb|EV263537.1|EV263537
EST:     ATGGAGCCTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCACGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31459786|gb|CD401814.1|CD401814
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|193395101|gb|FK360814.1|FK360814
EST:     ATGGAGCCTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG                         -TTTGAGGGACAGATCTCAGG
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGG
EST: gi|13789102|gb|BG651693.1|BG651693
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31465779|gb|CD407807.1|CD407807
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31307072|gb|CD392275.1|CD392275
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|214008378|gb|DB986320.1|DB986320
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGATTAGGAAGGAAGG                         GTTTGAGGGACAGATCCCAGGAAAAAACATTGAAATTGGCATAAATGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|14990436|gb|BI316109.1|BI316109
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|120494740|gb|EH222907.1|EH222907
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|120534400|gb|EH262533.1|EH262533
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|7691886|gb|AW760004.1|AW760004
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCANGAGAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31468638|gb|CD410666.1|CD410666
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31460635|gb|CD402663.1|CD402663
EST:     TTGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGNGAG
genomic: -TGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTG-GAG
EST: gi|31307394|gb|CD392597.1|CD392597
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|209701354|gb|BW655950.1|BW655950
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|120534404|gb|EH262537.1|EH262537
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|193501036|gb|FK464581.1|FK464581
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGTGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|19937016|gb|BQ081110.1|BQ081110
EST:     CTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: CTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|120533401|gb|EH261534.1|EH261534
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|57574332|gb|CX547307.1|CX547307
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|10253765|gb|BE821531.1|BE821531
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|151411669|gb|EV281480.1|EV281480
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCACGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|193603084|gb|FK558087.1|FK558087
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGTGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|12772095|gb|BG237022.1|BG237022
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGGAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31468302|gb|CD410330.1|CD410330
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|15815210|gb|BI787485.1|BI787485
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|23062603|gb|BU578520.1|BU578520
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|120496074|gb|EH224241.1|EH224241
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|209701353|gb|BW655949.1|BW655949
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|192331034|gb|FK020254.1|FK020254
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31463429|gb|CD405457.1|CD405457
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31309819|gb|CD395022.1|CD395022
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|51343115|gb|CO983848.1|CO983848
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31309647|gb|CD394850.1|CD394850
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|5688439|gb|AI941454.1|AI941454
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|26058444|gb|CA801358.1|CA801358
EST:     ATGGAGCTTGATGATGCAGTCCACACNGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAGAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|207792429|gb|GD765049.1|GD765049
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACAT-GAAATTGGCATAA
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAA
EST: gi|58014939|gb|CX701681.1|CX701681
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|15200642|gb|BI424453.1|BI424453
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31475106|gb|CD417134.1|CD417134
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|26058340|gb|CA801254.1|CA801254
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31462312|gb|CD404340.1|CD404340
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTTTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|31310507|gb|CD395710.1|CD395710
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|21676482|gb|BQ628833.1|BQ628833
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|14991049|gb|BI316722.1|BI316722
EST:     AGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: AGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|9205182|gb|BE331406.1|BE331406
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: gi|58015356|gb|CX702098.1|CX702098
EST:     ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG                         GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca

- - - - - - -  GGAGCT
- - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA