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GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca...
species | Glycine max |
transcript | GLYMA08G17810.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAEST: gi|193395101|gb|FK360814.1|FK360814
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCA
EST: ATGGAGCCTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG -TTTGAGGGACAGATCTCAGGEST: gi|14990436|gb|BI316109.1|BI316109
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGG
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGCEST: gi|7691886|gb|AW760004.1|AW760004
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCANGAGAAAACATTGAAATTGGCATAATTGGAGCEST: gi|26058340|gb|CA801254.1|CA801254
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGCEST: gi|26058444|gb|CA801358.1|CA801358
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACNGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAGAACATTGAAATTGGCATAATTGGAGCEST: gi|15815210|gb|BI787485.1|BI787485
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGCEST: gi|207792429|gb|GD765049.1|GD765049
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACAT-GAAATTGGCATAAEST: gi|12772095|gb|BG237022.1|BG237022
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAA
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGGAATTGGCATAATTGGAGCEST: gi|23062603|gb|BU578520.1|BU578520
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
EST: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG GTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
genomic: ATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactag ... tgtttcccagGTTTGAGGGACAGATCTCAGGAAAAAACATTGAAATTGGCATAATTGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGGgtaggactaggagcatgccatttcaagtttatgcactaaataattataaaactataatgaaaatgacatgtttaactattacggtccattaggaggccca
- - - - - - - GGAGCT
- - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA