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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTAGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGCGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttctcttcctctttttttgcttgtttgactgcttttctttcagtcctttaatatggcaactactaactccccaattgaaaacag

Basic information

species Glycine max
transcript GLYMA08G15380.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G840940_T01 (Zea mays), 5'ss of exon 1
TCAACTAGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGCGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttctcttcctctttttttgctt-gtttgactg-cttttctttcagtcctttaatatggcaactactaactccccaattgaaaacag
     | ||  | ||| |||| ||||| |||||||| ||| |||||||||| ||||||  ||| |||||||||||||||   |||||||| ||||| |||||| || |    |   |   || |  |||  | |||  | | ||      |||  | | |    |   || |    ||  |   |     |||
AGTGTTGGGAGAGAAGATTTGTTATGTTCAATTTCCGCAGAGATTTGATGGCATTGATCAACACGATAGATATTCAAACCACAATGTTGTGTTTTTTGATgtatgtatggcatgaattcattctaactttatctgaaagacattgaagatagtattctgaacaagtttctgcattatctacttctctttgcag

upper sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAACTAGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGCGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttctcttcctcttt-ttttgcttgtttgactgcttttctttcagtcctttaatatggcaactactaactccccaat-tgaaaacag
 |||   || || || ||||| ||||| || ||||| ||| |||||||||| |||||||||||||||||||| |||||| | || ||||| || || |||||| || | ||  ||   |||  |||| || | |   || |||  |     |||| |  | |  ||  |  ||         | || ||||||
GCAATCGGGAAAGAAAGTTTGTTATGTTCAGTTTCCGCAGAGATTTGATGGGATTGATAGACATGATAGATACTCAAACCGTAACGTTGTGTTCTTTGATgtatgtgtccttatctcttttgctttgtttctgtttatgttttagtgcttttcctcttttct--catttgatattgttttggtgtggaaacag

upper sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAACTAGGGAAAAAGGTTTGCTATGTGCAATTTCCTCAGCGATTTGATGGAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttctcttcctctttttttgcttgtttgactgcttttctttcagtcctttaatatggcaactactaactccccaattgaaaacag
 ||    || || ||  | || ||||| || ||||||||| | |||||||| ||||||||||| ||| |||| |||||  | ||||| || || ||||||||| | |||| | |    ||| | |    |||   ||  || | || |||  |  |  |      | |  |  |||    |||  ||||||
GCAGTCCGGAAAGAAAATATGTTATGTTCAGTTTCCTCAGAGGTTTGATGGGATTGATAGACACGATCGATACTCAAATCGCAATGTGGTTTTCTTCGATgtatgatttc-catggaatttgtctttgcgttgttctatttatgttacagctcccttctc-----attggtgtctctatgattataaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208034816|gb|GD834264.1|GD834264
EST:     GAATTGATAGACATGATAGATATTCAAACAGAAATGTGGTATTTTTCGAT                         ATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACG
genomic: GAATTGATAGACATGATAGATATTCAAACAGAAATGTTGTATTTTTCGATgtaagttttc ... ttgaaaacagATTAACATGAAAGGATTGGATGGGATACAAGGTCCAATATATGTCGGAACT