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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAATAGCCATAATGAGTCACCCAATCCCCAGCACTGATGATTCCCATTCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttacatgcagcatattaaaaatatatgtatttagttaaatttgtagaatatgttacaatacagatatagcatgggcagtggtttcttaactgaa...

Basic information

species Glycine max
transcript GLYMA08G13300.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8404346|gb|BE059980.1|BE059980
EST:     TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT                         GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATN
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: gi|208035181|gb|GD836407.1|GD836407
EST:     TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT                         GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: gi|193547656|gb|FK504601.1|FK504601
EST:     TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT                         GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: gi|4283991|gb|AI440725.1|AI440725
EST:     GGTGCAAATTATTTTACCACAGGAACCAGT-GGGTTCG-AAGTCAGACAT                         GTACCTATTTTGTTGT
genomic: GGTGCAAATTATTTTACCACAGAAAC-AGTTGGGT-CGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGT
EST: gi|208038580|gb|GD833290.1|GD833290
EST:     TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT                         GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT