1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGCACTCTATCGGAGGGCACAAGGGTATCTCCATCTTGTGGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGgtatgcttttgttctcaagtgtggtcaacttgaatatacagttaatatacttagttccaaagagacaacactgatatatggaatttctttgtatttattaaccactgttggatggattttatcag
species | Glycine max |
transcript | GLYMA08G11240.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAG GGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAAEST: gi|7232350|gb|AW567707.1|AW567707
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGgtatgctttt ... attttatcagGGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAA
EST: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAG GGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAA
genomic: CTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGgtatgctttt ... attttatcagGGATGTAAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCACTCTATCGGAGGGCACAAGGGTATCTCCATCTTGTGGACTTGGATCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGgtatgcttttgttctcaagtgtggtcaacttgaatatacagttaatatacttagttccaaagagacaacactgatatatggaatttctttgtatttattaaccactgttggatggattttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA