Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagctttgtgtcttctcatcatatatatatgtgtgtgtgtggatagaaagatagatttctggagaatctaagtggagttggattagtgcag

Basic information

species Glycine max
transcript GLYMA08G10180.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 10
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagc--tttgtgtcttctcatcat-atatatatgtgtgtgtg-tggatagaaagatagatttctggagaatctaagtggagttgg-attagtgcag--
||||||| ||||||||||||||||| ||||| || ||||| || || ||| |||| ||| |||| || ||||||||||||||||| ||  | || |||||||| |     |||| |||  |||  | | || | ||   || |  ||  ||| | | |   |||    |  |  |   |  |  |   | |  |  |   
AATTATCCAAAGAAATAAATGAGTCTTTCAAGCAATCATCTCAAGCAAGGACAAAGCTTCCATCTGGCATTGAAATGAGTGTTCACGTGCTTACAACAGGgtaggtaacatgtgccttgccatttttacatgtgtgctggtttactgagtagcatgttctgtttacacaacacttgtctaaacctaatactgatagatag

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagc-tttgtgtcttctcatc---atatata-tatgtgtgtgtgtggat--agaaagatagatttctgga---gaatctaagtg-gagttggattagtgcag----------------------------------------------------------------------
||||||| ||||||||||| || |||||||  || ||||| || || ||| |||| ||| | ||||| ||||||||||||||||||||  | || |||||||||   ||| || ||  |       ||| ||| | | ||      | | |   |  |||||| ||| | ||   ||    | |   | | |   |      ||                                                                      
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcagaacttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 10
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagctttgtgtcttctcatcatatatatatgtgtgtgtgtggatagaaagatagatttctggagaatctaagtggagttggattagtgcag---------------------------------------------------------------------------------
||||||| |||||||||||||| ||||||| ||| ||||| || || ||| |||| ||| | || || |||||||||||||| |||||  | || |||||||||   |  | | | | |||    |  |||  | | | ||| ||     | ||     | |     | ||  |   |  ||   |  ||||                                                                                  
AATTATCCAAAGAAATAAATGATTCATTCAGACAATCATCTCAAGCTAGGACAAAGCTTCCCTCTGGCATTGAAATGAGTGTCCATGTGCTTACAACAGGgtaaa--taatttttgcccattgctttgatac-tctctctgtaga-----acatgttccttttagatagctttggaaacctgacctcatgcatccatagtcctagcatgcgagctggacttttgatgttgttggttgtgtttatgtagttctgataaaatatgttgatttacag

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 10
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagctttgtgtct---tctcatcatatatatatgtgt--gtgtgtggatagaaagatagatttctggagaatctaagtggagttggattagtgcag
|||| ||||| ||||| || |||||||||||||| || || ||||| ||  |||||||  |||| || ||||| |||||||| || |||||||| |||||||| |     ||| |   | | |||    |||||  ||   |  || |||||  | || | || |   |    |  |  |   ||     || | |||
AATTGTCAAAGGAAATCAACGAGTCATTCAAACAATCTTCCCAGGCCAGAACAAAACTGCCATCGGGAATTGAGATGAGTGTCCACGTTTTAACAACAGGgtatgtacaatgtatcaattttatccaggatataactgctggaatgcggatatcatgacatatataaagcttgttaacttcccgtcta--taatacag

upper sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 10
AATTATCAAAAGAAATAAATGAGTCATTCAAACAGTCATCACAGGCGAGGTCAAAACTTGCATCAGGGATTGAAATGAGTGTTCATGTTTTAACCACAGGgtaagctttgtgtcttctcatcatatat-atatgt---gtgtgtgtggatagaaagatagatttctggagaatctaagtggagttggattagtgcag-----------------
||||||| ||||| ||||||||||| |||||||| ||||| || || ||| |||||||| || |||| ||||| |||||||||||||| ||||| || ||||||  | | | |  | |  |  | ||| | |  |   |        |    ||   |  ||  ||      |   |  | | ||   ||| |                     
AATTATCTAAAGAGATAAATGAGTCCTTCAAACAATCATCGCAAGCCAGGACAAAACTTCCAACAGGAATTGAGATGAGTGTTCATGTCTTAACAACTGGgtaa-ttctatcttattttgttttctattacacttcaagaaaacacagtcctaatatttaatcacttatttcttccaaggaatttaacttattatttgagtggctgggctacag