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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCGGATATCCGATTACTCTGTAAAGAGACAGCAATGCAACCCTTAAGACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtttacaaaatctaaccccactacagttgccaaaactggtctacacgggaacattgatagctgtttcttttatgtagattttgcaactataagctatttactttaaacaatgtgttagcttattttttaaaatatatgcttgagttttgttttattcatggcaaactaaaagtgatcattgggttacag

Basic information

species Glycine max
transcript GLYMA08G09050.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707326|gb|BW670618.1|BW670618
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58024174|gb|CX710915.1|CX710915
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58023441|gb|CX710182.1|CX710182
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58024561|gb|CX711302.1|CX711302
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|298186847|gb|HO033946.1|HO033946
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58023989|gb|CX710730.1|CX710730
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58018662|gb|CX705404.1|CX705404
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|208287192|gb|GE089266.1|GE089266
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|207780459|gb|GD750798.1|GD750798
EST:     ACGCTTAATGTCACAACTTGAGCAGAAC-AGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAG
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAG
EST: gi|192331318|gb|FK021015.1|FK021015
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58020971|gb|CX707713.1|CX707713
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|193629981|gb|FK573287.1|FK573287
EST:     TTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCC-AAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: TTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58021730|gb|CX708471.1|CX708471
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|22931036|gb|BU548175.1|BU548175
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58021561|gb|CX708302.1|CX708302
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATCGGATATCCGATTACTCTGTAAAGAGACAGCAATGCAACCCTTAAGACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtttacaaaatctaaccccactacagttgccaaaactggtctacacgggaacattgatagctgtttcttttatgtagattttgcaactataagctatttactttaaacaatgtgttagcttattttttaaaatatatgcttgagttttgttttattcatggcaaactaaaagtgatcattgggttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG