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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag

Basic information

species Glycine max
transcript GLYMA08G08730.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g44040.1 (Oryza sativa), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaa-tctccaatactagcttgtg--tggtggtcattgggtattttt------tttataatatttagtccagctat-------tttaaatttgaaatatttcaccatctcag-------------------------------------------------------------
|||  |  |  | || |   ||||||||||||||||| ||||||| |||||||| || || ||||| ||||||||||| ||||||||||| ||||||||||||| | | |||   |  |   ||  || |  | ||| | |||   |      | | |    ||  | ||  ||         ||||  |  ||   | ||||  ||   |                                                              
AAAAGCAAACTTACCACTGTTGCATGAGTGGCATTTCCGATCTGGCCTTGATCGTTATATATGGATTATTGGAATGATCTATGCCTACTTCCATCCAAATgtaagttttcaaggatcacagatgactgttttttatttgatatcactgtagagtctttgtccttctgcccttctccatcattgtttatgtaggatgcaattcattatgctatggtttcaggtatttttcttctatcagtagtagtgcttgaaatgtagatctctgtcatacag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta----------------atctccaatactagcttgtgtggtgg--tcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcacc-atctcag------------------------------------------------------------
 ||| |  |  | || |   | ||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||| ||||| ||||| || || ||||||                |||  || | |   | | ||     |  | | || | | |   | ||   | ||   | ||   ||||     | |  |  | || |  || | |                                                             
CAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGATCTATGCTTACTTCCACCCTAATgtaagtaattcggttatggatccacatttcctccctttggaactgcatgagtgagcagtacatataccgtgttcctttcatacatttcttcctagggagttctctcttattttaagaatatgttccttgtttatactatatattaatgtagcatggaatccgctatctgaaatag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta---atctccaatactagcttgtgt------ggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag----------------------------------------------------------------------
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||   || ||   ||    | | | |      | |   | |  |  | | | | ||  | || |  |        | |  || |   || || |   |||||                                                                        
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagttatggacctatattaccctgatcaccctctgagactgtatctacgagatgttattggatacgtctcgatat---attttccctaatctctatatatattaagcatcgtttcttttgttcagatcatgttaaccttaacatggagccttttgacgtaaacag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta---atctccaatactagcttgtgt------ggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||   || ||  |||    | | | |      | |   | |  |  ||| | | |   | || |  |        | |  || |   || || |   |||||  
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcagatatggacctatattaccctgatcaccctctgagattgtatctgcgagatgttattggatacgtctcgatat---attttccctaatctc--

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgta---atctccaatactagcttgtgtggtggtcattgggtattttttttataa-tatttagtccagctattttaaatttgaaatatttcaccatctcag
 ||| |  |  | || |   | ||||||||||||||| ||||||| ||  |||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||   || || ||||    | | | |     | ||       |    || ||  |      |    ||   |     | || ||||||  ||   ||  
CAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCAATCGATACATATGGATTATTGGAATGATTTATGCTTACTTCCATCCTAATgtaagtatttcaaatatggacctatattaccctgatcaccctctgagattgtatctgcgagattttactggatacgtctcgatatattttccctaatcta

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaa-tctcc-----aatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 |||    |  | || |   | || || ||||  ||| | ||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||| || || |||| | | |     |  |||  | |   ||| |    ||  || |||  |   ||    ||  || |   ||       ||  |   |  || ||      
TAAGATGAACTTACCCCTGTTACACGAATGGCGCTTCCGCTCTGGCCTTGATCGTTACATATGGATCATTGGAATGATTTATGCTTACTTTCACCCCAACgtaagtgttctaaagagaactgacattcatggagtgtgttaagtgtttcctccttatg--ttgatctaaacatgcatgccttctatcctgacaacaag----

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G29890.2 (Arabidopsis thaliana), 5'ss of exon 8
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 || || || || || ||  | || || ||||||||||||||||| |||||||||||||| ||||| || || ||||| ||||| || |||||||| | |||||| ||||  || |       ||||| |         |  |||||   |||| |  ||  |  |     || |  | |||||     || ||||
TAAACCAGACCTTCCACGTCTACACGAATGGCATTTCAGATCTGGACTTGATCGCTACATATGGATCATCGGCATGATATATGCATATTTTCATCCCACTgtaat-tccagaacca-------tggtgctt--------tcattttttccatatctcctctcgaaagacgcaactaaatatattg-gggatttcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatt-tagtccagctattttaaatttgaaatatttcaccatctcag
 || || || || || |   | ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| |||||||| || ||||| | |||||      |  |||    |  |  | ||  ||   ||| || |    ||   |    |  |  ||||||    |||| || ||    ||| ||||
TAAACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATGCCTATTTCCATCCCACTgtaactcttgaaccta--cagccttctcgttttttcatatcttctcatgaaccctacgattaaaatatttt----ttgacatttt----catttcag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 10
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 ||||| ||||| | |||  ||||||| ||||| || ||||| || |||||||||||||| ||||| || ||||||||||||||||| | ||| |||| |||||  ||   ||||  | | | |    ||  || | || | |   | |||||        | ||  |  ||| |||  ||  ||| | |      
CAAGCCCGATCTTCATCGGCTGCATGAATGGCACTTTAGATCAGGCCTTGATCGCTACATATGGATCATCGGAATGATTTATGCCTATTATCACCCAACTgtaagttct--tacttccatttttttccgttttttg-tagtgtcgatgtaata--------aact--tcaaaacttgggatcattctctag-----

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 || |  | |||||||||| ||||||| |||||||| |||||||||||||||||||| || ||||| || |||||||| |||||||| | ||| || |||||||| |     |     | ||    || | |||   ||  | || | |     |  |||||   | |   ||    | ||||||     ||| ||
TAAACAAGGTCTCCCTCGACTGCATGAATGGCATTTTAGATCTGGGCTTGATCGCTATATTTGGATCATCGGAATGATATATGCCTATTATCACCCTAATgtaatttttttcaagtattggtacaatgatgattttatagctcttcttt----ctccgtccactaactggtaa----atatattttttgttcttag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S74_21V6.1 (Physcomitrella patens), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAA----ATgtaatctccaatactagct---tgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag-----------------------------------------------------------------
||||     |   |||    | || || |||||||||||||||||||| || || || |||||||| ||||| ||| | |||||||| |||||||| |    ||||  | |  |  ||   ||    ||       |  || ||| |   |    ||| | | |||   ||  |||    | |||  || | ||  ||   |                                                                  
AAAGAGCCCTGCGCCTTTGCTTCACGAATGGCATTTCAGATCTGGGCTCGACCGATATATCTGGATTATTGGCATGCTCTATGCCTATTTTCATCCTACGgtatgtcgttttgaccaccttctaaccgtagaaaaatggtttggt-tagatcccgtaagagtgagtgttgcc-tttccgctgtgacttactacagaattgtatttattgcaaaagtttgtaagtttcgcatgattgaacatctttatttgtgaactacatgtttccag

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ29067 (Selaginella moellendorffii), 5'ss of exon 9
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAA--ATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 ||||| ||||||||     | |||||||||||||| || || || ||||| |||||||| ||||||  ||| ||||||| ||| ||||| ||||| |   | | |  | |    ||  |   |  |   || | || |  | | |                                                    
CAAGCCCGATCTCCCAGTTCTACATGAGTGGCATTTTAGGTCCGGTCTTGACCGCTACATTTGGATATATGGGATGATTTGTGCGTACTTCCATCCGACGgtatgagtttctgcgctgtcagattcgaccgtaactgag-gtctatgcag------------------------------------------------

upper sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ17601 (Selaginella moellendorffii), 5'ss of exon 8
AAAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAA--ATgtaatctccaatactagcttgtgtggtggtcattgggtattttttttataatatttagtccagctattttaaatttgaaatatttcaccatctcag
 ||||| ||||||||     | |||||||||||||| || || || ||||| |||||||| ||||||  ||| ||||||| ||| ||||| ||||| |   | | |  | |    ||  ||  |  |   || | || |  | | |                                                    
CAAGCCCGATCTCCCAGTTCTACATGAGTGGCATTTTAGGTCCGGTCTTGACCGCTACATTTGGATATATGGGATGATTTGTGCGTACTTCCATCCGACGgtatgagtttctgcgctgtctgattcgaccgtaactgag-gtctatgcag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208333468|gb|GE126233.1|GE126233
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAAATTGGAAGAGAGTGAGATCAAGAGGAGAGC
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctcca ... accatctcagGTTGAGAAATGGATGG-AAAAATTGGAAGAGAGTGAGATCAAGAGGAGAGC
EST: gi|207801630|gb|GD772930.1|GD772930
EST:     ATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAAT                         GTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGAGATCAAGAGGAGAGCT
genomic: ATCGCTACATCTGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATgtaatctcca ... accatctcagGTTGAGAAATGGATGGAAAAATTGGAAGAGAGTGAGATCAAGAGGAGAGCT