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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaatatcatgaacatactgtcatttcatgttttgttttataccttcattccatgttttgtgggataatgcttccgtggcataatacaagttattgcacag

Basic information

species Glycine max
transcript GLYMA08G07840.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07840.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G161019_T03 (Zea mays), 5'ss of exon 10
GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaatatcatgaacatactgtcatttcatgttttgttttataccttcattccatgttttgtgggataatgcttccgtggcataatacaagttattgcacag
|| ||||||||||||||||| || |||||||| || | ||| |||||||| ||||| ||||  |  |  |||| ||       |   | ||||| | ||    |  ||||  || | |    | ||  | ||| | |  |                     
GTTGTCCCTACAATATACACTGATATTAGAGGACGCGGTATTCATTCAAACCAGgt-ttgtggaactattgaatatg------tgcaacgttttatattccctcaacatta-atatct----gtatgttactttcatttccag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888387|gb|BQ741600.1|BQ741600
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|209704675|gb|BW675883.1|BW675883
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|58019656|gb|CX706398.1|CX706398
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|58019280|gb|CX706022.1|CX706022
EST:     TCCTTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT