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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccctcttattacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaactgaaaaatacttatctattattttcatgcacttag

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 10
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccc-tcttattacacacacctgatattttcttagtcaaaccc-----acattcttatcctaccacatattgtaaattattt-gaccaactgaaaaatacttatctattattttca--tgcacttag
||||| ||||||||||| || ||||| |||||||||||||| || || || |||||||||||||| || | ||| ||| | |||||||| || |||||| |  | ||   | | |  | | |     | |||  |  | ||||   |       ||||| |||  | ||     || |  | |     |   | || |  |       |  ||    ||||  |   | |||
GAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATgtaggtttcttaacatgtttcagcatatatggaagttatcctggttgtcagggctttcaagcattcatatgtttccttgccttttccacttcccaggatatctaattagagtcccttgatctcgttcaattatgcatag

upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccctcttat-----tacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaa-ctgaaaaatacttat--ctattattttcatgcacttag
||||| |||||||| ||||| || || | |||||||||||| || || ||||| ||||||||||| || | ||| ||| | |||||||| || |||||| |    |    | ||      |     ||  |  |   || |  ||     |||||| |||||  | |   |  || | | || |    | |  ||||  | ||  | |  || | ||| ||||   | |||
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag

upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccctcttattacacacacctgatattttcttagtcaaacccacattcttatccta-ccacatattgtaa----attatttgaccaactgaaaaatacttatctattattttcat----gcacttag---------------------------
|||||||||||||| || ||||||||||||||||| ||||| || || || ||||||||||| || |||| ||| ||| | ||||| || |||||| |||||||    ||||| ||       ||| |  || ||| ||| ||      |||  | ||  | |  || |||||      |||||||  |   |   |   | ||| | | | || |  ||     ||  ||                            
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaa-gttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgc--gattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag

upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S221_85V6.1 (Physcomitrella patens), 5'ss of exon 12
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcacc-ctcttattacacacacctgatattttcttagtcaaacccacattcttatcctaccacatattgtaaattatttgaccaactgaaaaatacttatctattattttcatgcacttag
||||| ||||||  ||| ||||||||||||||||| || || ||||| |||||||| ||||| ||||| |||   | ||| || || || || ||||| ||  || |  | |||||   |  | ||    |    | |  |   ||       | || | ||  |  ||   |||  | || |    | || ||                              
GAGGTAGATCCAAACGACGATTTGACTGATGATGACATACGGACAGCTATACAGAACGCAACAGGACCCAAAAATGTACTTTTCGTACCGGAGgtaggactattctcaacgcttatcgtattctcccctaacaagcattatttgacttgtgcacatacctta--atttaacttaatatgttggcaagattgcaag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924507|gb|AW830533.1|AW830533
EST:     CAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAA                         GTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA
genomic: CAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtctta ... atgcacttagGTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCA