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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACAGAAATGGGAAGCTCGTTATTTCTTCCAATAGgtgagacttaaaacattaattgcatgaactatcaaaatttggtgaatgactttatcatttgtgaaacag

Basic information

species Glycine max
transcript GLYMA08G02260.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02260.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g00650.t01 (Vitis vinifera), 5'ss of exon 9
ACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACAGAAATGGGAAGCTCGTTATTTCTTCCAATAGgtgagacttaaaacattaattgcatgaactatcaaaat-ttggtgaatgact--ttatcat------ttgtgaaacag
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ACTACATAGAAGAAATTGTGGTGTCAGCAGTTTCTTATCATTTGATGAATAACAAAGATCATGAATACAAAAATGGGAAACTTGTTATTTCATCCAAGAGgttaga-ttatagtgttctttaatggttttctcaatatgttaattagtaggtactcatcatgtttggctatgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964757|gb|BM271487.1|BM271487
EST:     AACAAAGACACTGAATACAGAAATGGGAAGCTCGTTATTTCTTCCAATAG                         TTTGTCCCATGCATTGAATATATTCCACAAGGGGAAATCCAGTAGAAGAGA
genomic: AACAAAGACACTGAATACAGAAATGGGAAGCTCGTTATTTCTTCCAATAGgtgagactta ... tgtgaaacagTTTGTCCCATGCATTGAATATATTCCACAAGGGGAAATCCAGTAGAAGAGA