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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCAGCAGTATGTTGATTATGCACTTGATGTTCCTATGTATTTTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatctatctttaatattcttgtaatttaaggctatctattgtagccccgacattctttattgtgaaacttactttgcttgaccatagtatacacgtagtcttgatttgttcaatgtagagaattgattatttttttttattgcag

Basic information

species Glycine max
transcript GLYMA08G01750.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 5'ss of exon 10
GTTTCAGCAGTATGTTGATTATGCACTTGATGTTCCTATGTATTTTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatctatctttaatattcttgtaatttaaggctatctattgtagccccgacattctttattgtgaaacttactttgcttgaccatagtatacacgtagtcttgatttgttcaatgtagagaattgattatttttttt-tattgcag
|||| ||||||||||||| || ||||| ||||| |||||||| |||| |||  | ||  ||| ||| |||||||||||||||| ||| ||  ||||    ||||||| ||||| || |     | | ||| |  ||||    |   |          ||||  ||| | |         ||||| | ||        |||||| || |   || ||   |  | || || || ||  |  |||||
GTTTGAGCAGTATGTTGACTACGCACTCGATGTCCCTATGTACTTTGCCTACAGAAAGAACAAATACATCGACTGTACTGGAATGACATTTCGGgtcaaaatctatccttaatcttttc----tgttaggtt--ctataactgtttcattgcaaggaattggcaaattgaa-------aaccatgggatct------tcttgaattat---atcta---atctcataatattcttcatgctgcag

upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 10
GTTTCAGCAGTATGTTGATTATGCACTTGATGTTCCTATGTATTTTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatctatctttaatattcttgta----atttaaggctatctattgtagccccgacattctttattgtgaaactt-actttgcttgaccatagtatacacgtagtcttga-tttgttcaatgtagagaattgattatttttttttattgcag
 ||| |||||||||| |||||||| ||||||||||| ||||| ||||||||||||||  | |  ||||| ||||||||||||| | ||||| ||||| ||||||| | |||||| |||||||    ||||   ||| |||    |||||  |   |||||| || | | | || | ||| ||||| |||| | | ||     ||||||  || ||      | |  | |  | || | ||  |  | |||
ATTTGAGCAGTATGTAGATTATGCTCTTGATGTTCCAATGTACTTTGTCTATCGGAAGAAGAAGTATATTGACTGTACTGGAATGTCCTTCCGGgtttccatctaaccttaatactcttgtacttgattttgtgctttcttcattagccatgctcttctttgttctaagattttatttttcttgatcataatcttca-----tcttgagcttttttggaacataatacttgtcatatgttacttcttcag

upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S479_14V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTTCAGCAGTATGTTGATTATGCACTTGATGTTCCTATGTATTTTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgtt-cccatctatctttaatattctt--gtaatttaaggctatctattgtagccccgacattctttattgtgaaacttactttgcttgaccatagtatacacgtagt-cttgatttgttcaa----------tgtagagaattgattatttttttttattgcag---------------
|||  |  |||| ||||||||||| || || |||||||||||||||||||| || ||     | ||  | |||||| ||||   | | || | |||     |  |  |   |  |  |||  | |    |||||  |  ||||          || |   |||      |  | |||  || | |||         ||| | |||    |    ||          | ||| | |   || ||||  |    ||| ||               
GTTCGAAAAGTACGTTGATTATGCTCTAGACGTTCCTATGTATTTTGTCTACCGTAACGGTCGGTACGTTGACTGTTCTGGTCTGTCATTTAAGgtaatttactttgccacagcaggctttagcatgacaaggc-gttcattgctagtttattatacacgattagattgccaatttt--ttaatcatctgtgttgtgtaatgcttcggctaccgaagtttcgggtctttagggcacaaatcatttcatcaacttggagcattgtattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478861|gb|AW666435.1|AW666435
EST:     CACAGATATATCGACTGTACTGGAAAGACCTTCAGG                         GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: CACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
EST: gi|26047199|gb|CA784068.1|CA784068
EST:     TTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGG                         GACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC
genomic: TTGTCTATCGGAAACACAGATATATCGACTGTACTGGAAAGACCTTCAGGgttcccatct ... tttattgcagGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTC