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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGGGACGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaattttcttggcacttggttaattgaagagtgactcagttgcacttttggtcctcctattttctcaatttcatgaattttgttcctctcacttt...

Basic information

species Glycine max
transcript GLYMA08G01730.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01730.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 10
GTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGGGACGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaattttcttggcacttggttaattgaagagtgactcagttgcacttttggtcctcctattttctcaatttcatgaattttgttcctctcacttt------
|||||| || || ||||| || |||||||||||||||||||| || |||  ||||||||| || ||||| ||     ||||||||||  | ||| |   |||   |  ||   |  |   ||     |||  | |  |  |     | | | |  |      |   |  |||| |   | | |  | |||  |  | | |      
GTGGACCAATCAAATGCAAGATACATTGAACTCAAAGAAGAAGGGTGACAATGCTTTTCGACAAAAGGACTTCTCTTCTGCAATTGACTGTTATTCTCAGgttgatt-ttgcatctgtgtttat---attctatatgggtttgtgagaagtgtcaggagagttgcatgatcaaat--gtaattagtattcaacatagtatgaacag

upper sequence: GLYMA08G01730.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 10
GTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGGGACGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaattttcttggcacttggttaattgaagagtgactcagttgc--acttttggtcctcctattttctcaatttcatgaattttgttcctctcacttt
||||||||| |||||||| || || ||||||||||| ||||| || |||  ||||||||| || ||||||||||   |||| |||||| ||||| |   |||  |   | ||||   |   |  || ||      |||||  || | |     ||   |  |   || |  | |   ||||   ||   |  ||  || |  
GTGGACGAATCAGATGCAAGATACGTTGAACTCAAAAAAGAAGGGTGACAATGCTTTTCGACAGAAGGATTTTACTGCTGCCATTGATTGCTATTCCCAGgtttgatgtgttctgctcttctattttatatggatgtgaccgagatactggagttgcatgattgaatgtgattagagtcataggttcgatgtcttccaat--

upper sequence: GLYMA08G01730.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 11
GTGGACGAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAAGGGGACGCTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcag--taattttcttggcacttggttaattgaagagtgactcagttgcacttttggtcctcctattttctcaatttcatgaattttgttcctctcacttt
|||||| ||||||||||| |||||||||||||||||||| || || || | |||||| |||||||| ||||||| | ||||||||||  |||||||   |||||   |  ||  |    |  ||  | ||||  |   | | | | |   | | ||  |  |  |||||| |||  |  ||       ||      |||  |
GTGGACCAACCAGATGCAAGAAACATTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCCGGCACAAAGATTTTAGAGCTGCAATTGAATGCTATACCCAGgtcaaaatggttaaccaccccttttatgaattttattatta-ttattattattattattattattattttatcatgtctatttggaa-gtagaatgcacagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400750|gb|EV270564.1|EV270564
EST:     CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG                         TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: gi|192299191|gb|FG992907.1|FG992907
EST:     CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG                         TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: gi|15199823|gb|BI424029.1|BI424029
EST:     CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG                         TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
EST: gi|51337033|gb|CO980899.1|CO980899
EST:     CTGNNNNNCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATG                         TTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT
genomic: CTGCTTTTCGGCACAAGGATTTTAAAACTGCAATTGATAGCTATACGATGgtcagtaatt ... tgtaacacagTTCATTGATGTTGGAACCATGGTTTCTCCAACGATTTATGCACGTCGTAGT