1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtcctgctccgtacttcctttttgagaattttttttctgatgaataagaaattttcttttagtaccagttcatttagtttctatacaaactaaaccgtttgttcttttggttggttactctaaaattgactcag
species | Glycine max |
transcript | GLYMA08G00670.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAAAACAATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGGEST: gi|193545172|gb|FK499899.1|FK499899
genomic: TGGAGAAAAC-ATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
EST: ATGGNG-AAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGGEST: gi|208194090|gb|GD989851.1|GD989851
genomic: ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
EST: ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA AGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
genomic: ATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtc ... attgactcagAGCACATCATGGTTTTGGTTGGGTAGGGGAGTGGGCAAGCACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAAgtaagatgtcctgctccgtacttcctttttgagaattttttttctgatgaataagaaattttcttttagtaccagttcatttagtttctatacaaactaaaccgtttgttcttttggttggttactctaaaattgactcag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAA