1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTCGGTGACAAAAGCTTATCAAGAATGGAGAAAGAATGTGTTGAGATTGATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgttacactttgtcaatgagaaaaagtgaatctgtttttgctgtgtcaacatgacaaccctaaatcattttaatttttacacattttagcatttcagttttcagctgtgtatttaacgtgaaatctcattgttgtgatggatttacctatag
species | Glycine max |
transcript | GLYMA08G00380.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAEST: gi|5760607|gb|AI965970.1|AI965970
genomic: GTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCA
EST: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACATAGACCACTEST: gi|7639325|gb|AW733650.1|AW733650
genomic: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAACATAGACCACT
EST: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACEST: gi|14990848|gb|BI316521.1|BI316521
genomic: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAAC
EST: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAEST: gi|21638885|gb|BM139931.1|BM139931
genomic: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCA
EST: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCAEST: gi|16342700|gb|BI968295.1|BI968295
genomic: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCA
EST: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAG CTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCA
genomic: ATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgtta ... ttacctatagCTGGTTGCAAAACAACATAGACCACTTCCTGAAGACTTGGATTACTATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGGTGACAAAAGCTTATCAAGAATGGAGAAAGAATGTGTTGAGATTGATATAAAGTATGAAGGTTTCATCTTGCGTCAGCAAAGCCAACTTCAACAGgtatttgttacactttgtcaatgagaaaaagtgaatctgtttttgctgtgtcaacatgacaaccctaaatcattttaatttttacacattttagcatttcagttttcagctgtgtatttaacgtgaaatctcattgttgtgatggatttacctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG