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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttcttttttctagtactggctttgaaaattgttaatttgttcccttgttgttttcatttgtgctttgcttgcgctcatggaggttcaaagctgaatataattttacttgtag

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 10
GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttcttttttctagtactggctttgaaaattgttaatttgttcccttgttgttttcatttgtgctttgcttgcgctcatggaggttcaaagctgaatataattttacttgtag
| || || ||||| |||||||||||||||||||||||||||||| | |  |||           || | | | |   ||  | | ||  |  ||    |      |  ||||| |   |      |  |    | || |       ||| | |  ||    |      || ||
GTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTgtagg---------ttctatatggagatg--tgtcaatttgctttgcctaacttttgtttgttctacctaacatatctccactgatcttcacttcccaatgatacatcctctcactactgcag

upper sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 11
GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataatcttctttt----ttctagtactggctttgaaaattg-ttaatttgttcccttgttgttttcatttgtgctttgcttgcgctcatggaggttc--aaagctgaatataattttacttgtag-----------------------------------------------
|||| ||||||||||||||||||||||| ||  | |||||||||||||||||| ||| |  |  ||||    ||    | |||    | ||| ||  | ||    | |  || || |     | |  ||||  |||   ||| |     | |  | | |||   || |||| |  |   |                                               
GAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATGgtatcatgaaatcattttcatgtttccatcctgttactaaaatttaatcaagcactgctgttcttttagatgtcttcgcttatcttcttctcctatttctccccatatctgttgattatttgaggttctgtgaaatcaaatgcagtttttagtaacttgttgtgtactcgttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151413214|gb|EV283022.1|EV283022
EST:     GAGCACACATTGGACCAGAGCCTACA-CTGACAGATTTGTTGTTGTCATG                         TCTGGTCCTGATGAAAGGAGTATTCCTGGAAATACAATAGCTGT-GATGCT
genomic: GAGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGgtaccataat ... ttacttgtagTCTGGTCCTGATGAAAGGAGTATTCCTGGAAATACAATAGCTGTTGATGCT