1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAAGAAACTCACCGATCAGTCATTAAAGCTTTTTGAATTTTTACCTAAAGCAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatgtattatagttctatacttgctgtgtttatcttgcctgtaatgcaatttgactaagcctcaatgttggtatatatttccatttag
species | Glycine max |
transcript | GLYMA07G39380.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAGEST: gi|193420756|gb|FK385793.1|FK385793
genomic: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
EST: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTAGACCAAGATAGAAACAEST: gi|298181953|gb|HO026128.1|HO026128
genomic: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTT-G-CCAAGATAGAAACA
EST: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAG GTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAAAGGTTGAAACTGAG
genomic: CAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatg ... ttccatttagGTTGCCAAGATAGAAACAGAGAAAATGCTTATTCAAATGGTTGAAACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAACTCACCGATCAGTCATTAAAGCTTTTTGAATTTTTACCTAAAGCAATTCAAGAACAATTAATGCTTGAAAGAGATCCGCATGGAAATGTTCAGgtgcttaatgtattatagttctatacttgctgtgtttatcttgcctgtaatgcaatttgactaagcctcaatgttggtatatatttccatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA