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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtcccctatttttgttgccatatatataaggtgaagacacctactttccaattgcag

Basic information

species Glycine max
transcript GLYMA07G39320.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtccc--ctatttttgttgccatatatataaggtgaagacacctactttccaattgcag
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||       ||   |    | | | | ||   |   | ||   |     | || ||||||    ||  || |||||  |                                     
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacggaacctctcttgagagtttagggg---atgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------

upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtcccctatttttgttgccatatatataaggtgaagacacctactttccaattgcag
 || ||||| ||||| || |||||||||   || |||||     | |||||||||||||| ||||||||| | || || ||||| || ||||| |||||||||       ||  ||   ||||||  ||       | |  | | |  |     |||||| | | |   |  |    | ||   ||   | ||  ||  || |            
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaagttgacattttgattataaaatcttaaatataa-agggtaatcaggattgagtgcacaaacatcctcaaga-atgcctattttcaatccaa-tatt------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240510|gb|BG359819.1|BG359819
EST:     CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAG                         ATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT
genomic: CTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaa ... ccaattgcagATTATCAATGTTTATAATCAAGAGTACGAGAGTGGTGCAGCATTCTGGCCT