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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtatgacgcttaagtattcctttttgttttttgacttgtcactttcttagcatttggaatttacttttcgcttttcaaaatacag

Basic information

species Glycine max
transcript GLYMA07G38920.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38920.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 5'ss of exon 9
GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtat------------gacgcttaagtattcctttttgttttttgacttgtcactttcttagcatttggaatttacttttcgcttttcaaaatacag
| | || | ||||||||||||||||||||||| || ||||| |||   ||||| || ||| ||||||| || | ||||||||            |  |||||   | |    | |  |      |||||  |||||||   | ||   | ||| | ||  ||    |||| ||||
GTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATGgtattcttctaacctcgttgcttacaaactttcctctagtcggcatcttgtacctttcttttaacttttgaattattatttactaa--aaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310715|gb|FK001139.1|FK001139
EST:     CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtatgacgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|31467919|gb|CD409947.1|CD409947
EST:     CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtatgacgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|31460571|gb|CD402599.1|CD402599
EST:     CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: CATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtatgacgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
EST: gi|209705751|gb|BW661419.1|BW661419
EST:     TTTGGATCATCCTATTTTGGACTTGATTTATTTCATG                         CTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG
genomic: TTTGGATCATCCTATTTTGGACTTGATTTATTTCATGgtatgacgct ... caaaatacagCTGGTTGAGGTCCTACCTTCAGCTTTAGTCCTCTACATCCTGCGCAAATTG