1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatattttttgatgtcattatcatattagtataccgtgctttgttttatcttatgaccctgttcatttgacttaatttctag
species | Glycine max |
transcript | GLYMA07G36550.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATEST: gi|193513713|gb|FK467327.1|FK467327
genomic: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatatt ... taatttctagGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCAT
EST: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATAEST: gi|17519074|gb|BM188116.1|BM188116
genomic: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatatt ... taatttctagGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATA
EST: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACEST: gi|193387768|gb|FK350973.1|FK350973
genomic: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatatt ... taatttctagGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATAC
EST: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATACEST: gi|193726520|gb|FK656180.1|FK656180
genomic: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatatt ... taatttctagGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCATAC
EST: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG GTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGNTTGCAT
genomic: TCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatatt ... taatttctagGTGGGTTATTTATGGTTTGAGCATATATACAAGCTGGACAAGATTGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTGgtattatattttttgatgtcattatcatattagtataccgtgctttgttttatcttatgaccctgttcatttgacttaatttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT