Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTAGACAGTGAGGGGCATCCTGTCATGGTTGTTGTAGGGGCCCACTTTTTACTTCGGTGTCTTGATCTGGAGCGATTTGTGCTATATGTGGTGAAGgtaatttggttataccctgctgctggatatctttttctgttggcaagcattagtttggccattataaattttttggcaatgcatacttctatttaaaaggaaaaactgatttgtgatcgtaagttctaatcagtcttccccccccccaacccccctttgttttccttggtgttaaatttcag

Basic information

species Glycine max
transcript GLYMA07G35280.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35280.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 10
TGGGGTAGACAGTGAGGGGCATCCTGTCATGGTTGTTGTAGGGGCCCACTTTTTACTTCGGTGTCTTGATCTGGAGCGATTTGTGCTATATGTGGTGAAGgtaatttggttataccctgctgctggatatctttttctgttggcaagcattagtttggccattataaattttttggcaatgcatacttctatttaaaaggaaaaactgatttgtgatcgtaagttctaatcagtcttccccccccccaacccccctttgttttccttggtgttaaatttcag
||| || ||||  ||||| |||||||| |||||||||||||| || |||||||| || || ||||||||||||||||| ||||| || |||||  | |||||||       ||  | | |  || |||   | | |   |         |  || |    | || | ||    ||  |||| | |                                                                                                 
TGGTGTTGACACCGAGGGTCATCCTGTAATGGTTGTTGTAGGAGCTCACTTTTTGCTGCGATGTCTTGATCTGGAGCGTTTTGTACTTTATGTTATTAAGgtaagcacacaatcacatac--ctcgatggttctctaactcactgcagttctgtctcaaaacta-acatacggtgcaaatgtacag------------------------------------------------------------------------------------------------