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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcgttatcttccttgctattaaacttaaactttcacaggtgtttatttattagtacttttaaacattctgactgggtaattgcttcacatag

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 10
GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcgttatcttccttgctattaaacttaaactttcacaggtgtttatttattagtacttttaaacattctgactgggtaattgcttcacatag
 | ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||  |||||||||| ||||||||||| || || ||  | ||||||||||||| |  | |||||  || || ||  | ||     ||      |  |   | |  |  |  |    | |   |  ||       | |||| || ||
CTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgt--tcatctttttt-ctgtttgatttgcttattgctgccttctccctaaacatcatatgcccagaagatatctaacagcgtacttctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688177|gb|BF595853.1|BF595853
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|208047241|gb|GD844338.1|GD844338
EST:     TTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: TTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|208221029|gb|GE020699.1|GE020699
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGNTTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAAACTGGTATAGGAACAGCCATTGCAATTGCT
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCC-AAACTGGTATAGGAACAGCCATTGCAATTGCT
EST: gi|15204849|gb|BI427617.1|BI427617
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACCAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|7691785|gb|AW759906.1|AW759906
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|14999814|gb|BI320628.1|BI320628
EST:     GAACGTACTGAAACGCGCATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|193415327|gb|FK375821.1|FK375821
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|20449753|gb|BQ253877.1|BQ253877
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|15284741|gb|BI468632.1|BI468632
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|9260012|gb|BE348159.1|BE348159
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|207826480|gb|GD798191.1|GD798191
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCA
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCA
EST: gi|31561027|gb|CD486865.1|CD486865
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|16346698|gb|BI972293.1|BI972293
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|15199917|gb|BI424075.1|BI424075
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|14011803|gb|BG726725.1|BG726725
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|6481839|gb|AW201110.1|AW201110
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|26269373|gb|CA820436.1|CA820436
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|31475923|gb|CD417951.1|CD417951
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|10237564|gb|BE806452.1|BE806452
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
EST: gi|10232365|gb|BE801253.1|BE801253
EST:     GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTG                         GTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG
genomic: GAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcg ... cttcacatagGTAACAAGATTAGCACCCAAACTGGTATAGGAACAGCCATTGCAATTGCTG