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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGATTTTTGATCAACTTTGCTGATGTTCTAGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtgagtcagtctagactttgctggtgatttcatgctatcagtttaacttttttgtgcactcttgctcattctgggtgttcaaatcattttatcccag

Basic information

species Glycine max
transcript GLYMA07G32180.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32180.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTGGAGATTTTTGATCAACTTTGCTGATGTTCTAGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtgagtcagtctagact-----ttgctggtgatttcatgctatcagtttaacttttttgtgcactcttgctcattctgggtgttcaaatcattttatcccag
|||||||||||  ||||    ||| |||||||||| ||  ||||| ||||||| || ||||||||| |||| || |||||||||||||| ||||  |||  | |     | ||  ||  | || || | |    ||   | |||  |    |  | |    ||||  | |   ||  ||  |||   ||
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagtacctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag

upper sequence: GLYMA07G32180.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g00290.t01 (Vitis vinifera), 5'ss of exon 9
GTTTGGAGATTTTTGATCAACTTTGCTGATGTTCTAGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtgagtcagtctaga---ctttgctggtgatttcatgc-tatcagtttaactt----ttttgtgcactcttgctcattctgggtgttc--aaatcatttta-tcccag
|| ||||||||||| ||||  ||||| ||||| ||  |||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||    |  ||    |||| |    |||| |||| ||| | ||||| ||    |||||    |||||   | ||     | ||   | | ||| ||| || |||
GTCTGGAGATTTTTAATCACTTTTGCCGATGTGCTTCAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCTTTTCATGACTATgtgagttctccatgaggtttttgttttcaattttatgcatattaatttaatttctgcttttgccttctctttgccttttcacatatttctataccatattaatctcag