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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGTTTTAATGCATTTGATAAAAATGCGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtttgtgttccttacttcctttattttggtacttatactaccatactacttactgtttctttttaattattggtaaggcagaagacctccatt...

Basic information

species Glycine max
transcript GLYMA07G28990.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G28990.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 10
ATGTGTTTTAATGCATTTGATAAAAATGCGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtttgtgttccttacttcctttattttggtacttatactaccatactacttactgtttctttttaattattggtaaggcagaagacctccatt
||||| |||  ||| || ||| |    ||  |||||||||| || ||||| || || || ||||||||||||||||||||||  | | | | |  |||| |      || |    |   | | || | || ||  |      |  |||   |  ||| | |  |||            
ATGTGCTTTGCTGCTTTCGATGAGGGGGCAAACCTTGATGTGTTAGATCACCCCATCCTTAACTTCATATATTACCTGgtaacctctctct-tagcttaatcatagaatctgatcatgaacattagcttaatatatgtaacctgatttcgttacttgatta--cag------------

upper sequence: GLYMA07G28990.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G14530.2 (Arabidopsis thaliana), 5'ss of exon 10
ATGTGTTTTAATGCATTTGATAAAAATGCGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtttgtgttcctt----acttcctt-tattttggtacttatactaccatactactt-actgtttctttttaattattgg--taaggcagaagacctccatt---------------------------
||||| ||| |||| |||||  |    || || ||||||||||| |||||||| || |||||||||||||||||| ||||||| | |   |   |||      || || | ||| |   |   ||||    || ||||  | | | ||    | ||| |||     |       || | ||| |                             
ATGTGCTTTGATGCGTTTGACGATGCAGCAGATCTTGATGTCTTAGATCATCCAATCCTAAACTTCATATATTACTTGgtaagctttccattcacctcttcagctaccatatatgtgcatgtgtatatagacacactatgtgaatcttagaatctaaatatgaagcttcttttaaaaatctctaaacaaaaagtgtgttctgtttacttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400805|gb|EV270619.1|EV270619
EST:     CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG                         GTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|209712880|gb|BW679157.1|BW679157
EST:     CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG                         GTGGTGGAAATGTTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|193385954|gb|FK351582.1|FK351582
EST:     CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG                         GTGGTGGAAATATTGCCTTCTT-TTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|19936698|gb|BQ080978.1|BQ080978
EST:     CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG                         GTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT