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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCACCTAGACAGTTGGATGCTTCCCGTTTTGAAAATAAGCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctccattaccatgtgcttttcaggggaacttttaaaaccaatcttagtatttgcatgctttgataatgtcatatggcttattcatattagagaa...

Basic information

species Glycine max
transcript GLYMA07G16400.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308015|gb|CD393218.1|CD393218
EST:     GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|193331095|gb|FK293255.1|FK293255
EST:     GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|208082768|gb|GD880438.1|GD880438
EST:     GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|10846272|gb|BF069195.1|BF069195
EST:     GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|13790590|gb|BG653181.1|BG653181
EST:     GTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGAGGGTGGAACAAATATGGTCAG
genomic: GTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|11690192|gb|BF597868.1|BF597868
EST:     GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: GCATTCTAGTATAGTTTCTTGTGGGGCCCGTCACAGTGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
EST: gi|193648825|gb|FK600680.1|FK600680
EST:     TGCTTTGCTAACTG                         ATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG
genomic: TGCTTTGCTAACTGgtacgcctcc ... catatcgaagATGATGGTCACCTATTCACTTGGGGGTGGAACAAATATGGTCAG