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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctatcttctggttgccaggatttaaatcaaagttattctgttattctattctctaatgctaacccccctccccccattttcttcag

Basic information

species Glycine max
transcript GLYMA07G09270.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.2 (Glycine max), 5'ss of exon 10
lower sequence: AT1G67300.2 (Arabidopsis thaliana), 5'ss of exon 9
GGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctatcttctggttgccaggatttaaatcaaagt-tattctgttattctattctctaatgctaacccccctccccccattttcttcag
|||||||||||||| |||||||||||||| || || || |||||||||||||| ||||| ||| | |  ||  | |   | ||| || | ||  |    ||||  |    |||||  |   |    |||   |    || | |||  | ||     |||   ||  ||||     ||     ||         
GGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTATTCAAAAGTGCTGGAGTACCATCGGACCTAGGCAACATATTTGTTGGAGTTTCAAACCTCTTGGgtacagtagccttctcctccactttttttttttttctgtcttttcaatcatatggatcttggattgtaacattgttctgattatcag------

upper sequence: GLYMA07G09270.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 10
GGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctatct-tctggttgccaggatttaaatcaaagttattctgttattctattctctaatgctaacccccctccccccattttcttcag
|||||||| ||||| |||||||||||||| ||||| |||||||| || ||||||||||| ||| | |||||||| |   | |||||||| |||||| ||||||  | | | |  |||| |  ||    ||  ||  |  || |  |  | |  | |  | | ||  ||       |      | | | | |||
GGTATAAACGCTGTTTTTTATTTCTCTTCCACTGTATTTAAAAGCGCGGGAGTGCCATCGGACCTCGCAAATGTGTTTGTGGGAATTGCAAATTTGTCAGgtatggttttgtacctgggtagcattccttgcat--atattgtaatactgtgttgtcttttgattgta-------taatttaaatctgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018453|gb|CX705195.1|CX705195
EST:     GTGCCATCAGACATTGCAAATGTCTGCATAGGAA-TGCCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: GTGCCATCAGACATTGCAAATGTCTGCATAGGAATTG-CCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: gi|192327720|gb|FK021355.1|FK021355
EST:     AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: gi|254319871|gb|GR830895.1|GR830895
EST:     AGTGCCATCAGACATTGCAAATGTCTGCATAGGATTTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGA
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGA
EST: gi|254339874|gb|GR857999.1|GR857999
EST:     AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAAGGAAGGTTCTA
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAA-GGAAGGTTCTA
EST: gi|151399677|gb|EV269548.1|EV269548
EST:     CTGCATAGGAATTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: CTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: gi|17023662|gb|BM094696.1|BM094696
EST:     AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: gi|192333445|gb|FK023974.1|FK023974
EST:     AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG                         GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC