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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgtaggtgttcataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttacccctttttttaaaaataatttttctttacttaaaacag

Basic information

species Glycine max
transcript GLYMA07G08030.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
TCGGCCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgtaggtgtt--------cataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttacccctttttttaaaaataatttttctttacttaaaacag
 ||||| ||||| ||||| |||||||| || | |||||| || ||||| || |||||||||||  | |||||||||||||||||  | || ||||| |||||| ||  |        | |   | || ||  | ||  | | ||||  | |||  ||  ||||    | ||||  ||  | |  |  | || ||   |||                                                                                                    
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttc---gttaagataaattgtttctttctttaa--attag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
TCGGCCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgtaggtgttcataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttacccctttttttaaaaataatttttctttacttaaaacag
| | || || |||||||| ||||| || |||||||||||||| ||||||||||||||||||||  |||||||  | |||||||| || || ||||||||||||            |||| ||||  |     |||||   | ||  ||       |  || |  | |    |||     ||| |   ||  |   |  | |   |||||  |                                                                                
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat---------tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttt-----tttccttaagaaaaaatcatttttcttgaacag--------------------------------------------------------------------------------