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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACTGATCAAATGCAGGACACATTAAATTGCAAGAAAAAGGGAGATGTTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagattagtgatgttgataagtaggaccagtctaaatttggcttgccattttttattcaaaacctgctgaatgctgattaaaacttagtaccccagtgc...

Basic information

species Glycine max
transcript GLYMA07G07850.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07850.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 10
GTGGACTGATCAAATGCAGGACACATTAAATTGCAAGAAAAAGGGAGATGTTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagattagtgatgttgataagtagg--accagtctaaatttggcttgccattttttattcaaaacctgctgaatgctgattaaaacttagtaccccagtgc
||||||||||||||||||||| ||||||||||  |||||||| || |||| |||||||||||| || ||||| |||   || ||||| || ||  | |||||   ||  ||    ||  | ||  |  |||  | | | | |    | | |  |   |||   |     ||   |  |  |  | | ||  | |     |  
GTGGACTGATCAAATGCAGGAGACATTAAATTCTAAGAAAAAAGGTGATGCTGCTTTCCGGCAAAAGGATTTCAGAGCTGCCATTGACTGTTATACACAGgttagtttctgtctatgccatgtttgccaccctttttattgttcacttctacatgcaatttgcagttatct--ttttttctctatattttcttctttccttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990503|gb|BI316176.1|BI316176
EST:     TTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAG                         TTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT
genomic: TTGCTTTCCGGCAGAAAGATTTTAGACTGGCAATTGAGTGCTACTCGCAGgtagattagt ... ctatatacagTTCATAGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGGCGCAGT