Sequence
atgc intronic sequence ATGC exonic sequenceTAGTGATTATGGAGCCTTCTTTGCAATTGCAAACAAGATTGACCGTTTACACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttgcagatctgcttctagatattctttttcatctgtgaatatattggttttaaaaaagattaatttatcc...
Basic information
species | Glycine max |
transcript | GLYMA07G06780.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 5
TAGTGATTATGGAGCCTTCTTTGCAATTGCAAACAAGATTGACCGTTTACACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattg----tttttcatatctcatttctttgcagatctgcttctagatattctttttcatctgtgaatatattggttttaaaaaagattaatttatcc-------------------------------------------------------------------------------------
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TGGTGAATTTGGAGCTTTCTTTGCTCTAGCCAACAGGATTGATCGAATTCATAAAAATTCTTGGATAGGATTTCAGTCGTGGAGAGTGACAGCAAGAAAGgtagaagatcaaattttatttgcatttaagcccccttaattttaatcgacgtgtatgattggtaaatcatgaatttacttgatgaatgaatcattggttaaccatgttattcatatgctttgatccttttaagaatgcaaagcagagaggtcttgcataatgattaagccaacaatttatactgaacag
upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 10
lower sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 10
TAGTGATTATGGAGCCTTCTTTGCAATTGCAAACAAGATTGACCGTTTACACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcata----tctcatttctttgcagatctgctt-ctagatattctttttcatctgtgaatatattggttttaaaaaagattaatttatcc
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TGGTGACTTTGGAGCTTTTTTTGCAATCTCAAACAAGATTGATCGGTTACACAAGAATTCATGGATTGGGTTTCAGTCCTGGAGAGCGACTGCCAGGAAGgtaaacaactttttcttataaaatccttcatcctttgtatagtagaatgctaaaattaccctgtgatgt---aatgtgg-gactttgaaacag------------
upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 10
TAGTGATTATGGAGCCTTCTTTGCAATTGCAAACAAGATTGACCGTTTACACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttgcagatctgcttctagatattctttttcatctgtgaatatattggttttaaaaaagattaatttatcc-
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TGGAGAGTATGGGGCCTTTTTTGCAATAGCTAACAGAGTTGACCGTATACACAGAAATGCTTGGATAGGTTTTCAATCTTGGAGGGCAACAGCAAGGAATgtatgtgatctcttctggttctgagttcctttgttaattc-catgtataggaatgtttcaatccttcattttagcatctttcaggttggtcttgtcagcgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9820927|gb|BE556437.1|BE556437EST: ACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAG GCATCTTTGTCCATAATTGCTGAAAATGCTNTATTAGATGCTATCCAATCC
genomic: ACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgatt ... gttttaacagGCATCTTTGTCCATAATTGCTGAAAATGCTTTATTAGATGCTATCCAATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGTGATTATGGAGCCTTCTTTGCAATTGCAAACAAGATTGACCGTTTACACAGAAATGCTTGGATTGGATTTCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttgcagatctgcttctagatattctttttcatctgtgaatatattggttttaaaaaagattaatttatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaga