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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt...

Basic information

species Glycine max
transcript GLYMA07G04640.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G17370.2 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt
  ||||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || |||||||| || ||||| |||||||||||||||| |     |        | |||    || | |   | |||   |||  ||||       ||  || ||  ||  || |  ||       |  |    
--GATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaa-----tagaaaaactgttataggtattctgtgacttaactcaa--ccatcatccataccttttttgaatcaaagatattttcgttatccag---

upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt-------------------------------
| ||||||||||||||||  ||    ||  | ||||| || ||| |||||| ||| |||||||||||||| ||||||||||||||||||     |   || |    |  |  || ||||  ||   | | ||||| | || || ||     ||| ||||||   ||  ||| ||    || | ||                                
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatccactaggaagtgctccttgtaatacta---tcacaacaaaaacagtttatttgaggttctttgat--gaagttttacattagtagatttcgggtacatcgttacagctatctatcttgcag

upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagcttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaagtttgcaaacttataattt
| ||||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || |||||||| || ||||| |||||||||||||||| |     |        | |||    || | |   | |||   |||  ||||       ||  || ||  ||  || |  ||       |  |    
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaa-----tagaaaaactgttataggtattctgtgacttaactcaa--ccatcatccataccttttttgaatcaaagatattttcgttatccag---

upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagc---ttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaag------tttgcaaacttataattt--
||||||||||||||||| | |  | ||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||     ||  |      ||||   |||| | ||||  | |      || |  |    |    | | |||   |||  ||       ||||   |  |   ||    
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag