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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGCCCTAACCCAGATATTAGACCAATTAATACAGAAGGGGCACAAAAGgtatcaattttgctatccctttatacttgtgttttttttatacgttcaaagattgtagtaaagttcttgacattgctaattttgttttgtctgaag

Basic information

species Glycine max
transcript GLYMA07G01890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
TGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGCCCTAACCCAGATATTAGACCAATTAATACAGAAGGGGCACAAAAGgtatca-att--ttgctatccctttatacttgtgttttttttatacgttca-aagattgtagtaaagttcttgacattgctaattttgttttgtctgaag-
||||||||| || ||||||||||| | ||||||||| |||||||| |||||||| || |||||||| || || ||||| || || || || || || ||||||    |||  || | | |  | |    |    |  ||   |   ||| | | | ||||||    || |   |   |   | |  |||     || ||  
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttaccaactttcttgtttctcataattcacaggtgttaataggcttgtagctgtgtccg-aattctaaaagtcatgtaaatgctaaatt

upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 10
TGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGCCCTAACCCAGATATTAGACCAATTAATACAGAAGGGGCACAAAAGgtat-caattttgctatccctttatacttgtgttttttttatacgttc--aaagattgtagtaaagttcttgacattgctaattttgttttgtctgaag--
 || |||||||| ||||||||||| | |||| |||| |||||||| |||||||| || || ||||||   |||||| | || || || || || || ||||||    |||     | || |||  |  || || | | | ||  ||    ||| ||  | ||  ||   |   || | | ||||   | ||    | |   
CGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGgtacattattccttcaaccattttaatctgcgtctgtatcatctgtcagaaaaaatgatcgtgtaggaatct-cagttccaattccctatttctcggatca

upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 10
TGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGCCCTAACCCAGATATTAGACCAATTAATACAGAAGGGGCACAAAAGgtatcaattttgctatccctttatacttgtgtttttttta---------tacgttcaaagattgt-----agtaaagttcttga--cattgctaattttgttttgtctgaag-------------------------------------------------------
||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| || |||||||| || || ||||| |||||||| || || ||||||||||   | |  | | || | |       |||| || |||         | | | ||   |||||     | ||| | |  ||   ||||| | ||||      ||    |                                                        
TGATGAAGAACCAAACTATGCAAAGTACATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAATACAGATGGTGCTCAAAAGgtattgttctatccaaccttgttgctccttgttcttgttaactaaagcttgcttccagccattgtttggtactaaggcttctgggccattggttatttgtaccagtacacatctgcatacaatgattggtatagatactaatatatgcttttatgattttctaccag