Sequence
atgc intronic sequence ATGC exonic sequenceTCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtgctaaggcatctctctttccattgacaacatgtgtgtttgtgtgttggggaccttgggggttgtttactaaggatgttgttttctccttgcaag...
Basic information
species | Glycine max |
transcript | GLYMA07G01480.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G51710.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtg-ctaaggcatctctctt------tccattgacaacatgtgtgtttgtgtgttggggaccttgggggttgtttactaaggatgttgttttctccttgcaag-------------------------------------------------
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TCAAGAAAGTGGCGAAGAAAGCTCAGAGACAGAATCTGTATATTCTCTAAAATGTCATATATCACATGAAGTGAACCACTTGCATGAAGGATTAAAACATgtgagcaacttttataattccattatagactttgtttctgatttttcagcatgtttctcggatacaaaaaaaatag--gacagcgtttgctatattctgcttattataaattttttttttttgatgaacggcttcaatttttctggtttactgaag
upper sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G21280.1 (Arabidopsis thaliana), 5'ss of exon 9
TCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtgctaaggcatctctctttccattgacaacatgtgtgtttgtgtgttggggaccttgggggttgtttactaaggatgttgttttctccttgcaag-------
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CCAAGAAAGTAGCGAAGAAAGCTCAGAGACAGAATCTGTCTTTTCTCTGAAATGTCACATATCACATGAGGTGAACCACTTGCATGAAGGATTAAAACATgtgagtaacta------tatcaatccactgaagattt-tgtttcggtttattgtgagatataacatgattatgtggaagatcctcctaagttcttactcagacatat
upper sequence: GLYMA07G01480.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g02500.t01 (Vitis vinifera), 5'ss of exon 10
TCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtgctaaggcatctctcttt-----ccattgacaacatgtgtgtttgtgtgttggggaccttgggggttgtttactaaggatgttgttttctccttgcaag
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CGAAGAAAGTGGTGAAGAGAGCTCAGAGACTGAATCAGTTTATTCACTTAAATGCCACATATCACACGAGGTGAACCATTTGCATGAAGGACTAAAACACgtaagtgttttcacagaactaataggaagctatcagtcttagaagatctcattcctttagttttcttataatactttattagcatacatgcaataccttt-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208203764|gb|GE006023.1|GE006023EST: GCCACATTATTCGTCAGGAGGTGAACCATTTGCATGAAGGGATAAAACAT GGGTTAAAATCCGAGTTAGAAAAGGCTTCACTTGTATTAGGGACCGTAGTG
genomic: GCCACA-TA-TCG-CAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtgcta ... acttttgtagGGGTTAAAATCCGAGTTAGAAAAGGCTTCACTTGTATT-GGG-CCGTAGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAAGAGAGTAAGGAAGAAAGCTCAGAAGCAGAGTCTGTTTATTCACTTAAATGCCACATATCGCAGGAGGTGAACCATTTGCATGAAGGGATAAAACATgtaagtgctaaggcatctctctttccattgacaacatgtgtgtttgtgtgttggggaccttgggggttgtttactaaggatgttgttttctccttgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg