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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagattcccatgtttatataagtaatgagcaatgaattcctgctgctttatcaagtcatagtaactggctcatttttttttggccag

Basic information

species Glycine max
transcript GLYMA07G01440.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 10
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagatt-cccatgtttatataagtaatgagcaat-------gaattcctgctgctttatcaagtcat---agtaact--ggctcatttttttttggccag--------
 | ||||| || || ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| |   |   |||||| | || | ||||    | |       | ||         |  |  |  |||    |||||||  |  |||| | ||  |  |           
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGgtaattctgtacatgttaagatgaataatccatacttctttgaggatcatgaacaataaactatttcactggagtaactctgattcatgtattgcttcctgaaactgcag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 10
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagattcccatgtttatataagtaatgagcaatgaattcctgct--gctttatcaagtcatagtaactggctcatttttttttggccag
|||||||| || || |||||||| || ||||||||||| ||||| ||||| || |||||||| || ||||| |  || |     | |  | | | |||   ||    |   || |  |   | |||     || |  |  | | ||||  | ||   |||
TTATGGGATATAAACATGGATTCAGGCCCAGTTGCAACTTTCCAAGTTCATGAATATTTAAGACCTAAGgtgaagtttcg----taacctgaatgatggcaaaaatgtcaatgttaagacatgtcacaatctaatgccgtgttaatttcatcttttgcag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 10
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagat-tcccatgtttatataagtaatgagcaatgaattcctgctgctttatcaagtcatagta--actggctcatttttttttggccag----------------
 | |||||  | || ||| |||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |  | | ||||||| | |||| ||||      |   ||  |||    | |  |   |||| |    ||||  ||    |  |      |                
CTTTGGGATGTTAAGATGAATTCTGGTCCTGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagataaataattgatggttc-tttgtgcacaatgaatagcacatatttttgctggaacaaacctgatccatgtgttactcaaaactgcag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 10
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagat-tcccatgtt-----tatataagtaatga------gcaatgaattcctgctgctttatcaagtcatagt--aactggctcatttttttttggccag-----
 | |||||  | || ||| |||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |  | | |||||||     || |||| | ||||      |     ||| | |    | |  |   |    ||   |||||   ||| | ||  | |  |      
CTTTGGGATGTTAAGATGAATTCCGGTCCAGTTGCAACATTCCAGGTTCATGAGTATCTAAGGCCTAAGgtaatttcttccatgttaagagtaaataattgatgattctttgtggacaatgcataacacatatttttgctggagccaaactgatccatgtgttacttggaactgcag

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 12
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagattcccatgtttatataagtaatgagcaatgaattcctgctgctttatcaagtcatagtaactggctcatttttttttggccag
|||||||||||||| |||||  | |||||||| ||||| ||||||||||| || ||||| |  |||||||| || |||| |   || |   ||  ||      ||      || ||||||    | |  || |  ||   |  |  ||||  |     
TTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcctaatattttgagagagatacatt-tggcgagttggtgctttgctgaatggtattccctttgtggtcattttcag-----

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagattcccatgtttatataagtaatgagcaatg-aattcctgc--tgctttat-caagtcatagtaactg---gctcatttttttttggccag
||||||||||| |||||||| || || |||||| |||| ||||||||||| || |||||||| || ||||| || || |  |  | | | ||||  |   ||    || | || |  | || | | || |  |   | ||     | |  |||  || |  ||||
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag