Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACGATTTTACACCCAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaataatcccttgctagccatttcatgttgatgctttgatgaatgtgatagttaaacatgcattcaatcattcaatgtaatcatttcattacagtatct...

Basic information

species Glycine max
transcript GLYMA07G01210.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g02220.t01 (Vitis vinifera), 5'ss of exon 9
AGTACGATTTTACACCCAAGGTCTCAGATTTTGGATTGGCTAGAACAGCACTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaataatcccttgctagccatttcatgttgatgctttgatgaatgtgatagttaaacatgcattcaatcattcaatgtaatcatttc-attacagtatct--
|  | || |||||||| || || || || ||||| ||||||||||||||||| || ||| | ||||| || ||||| ||||  || |||||||| |||||||| ||||  | | |   |    |||| || |  |  | |  ||| |  || ||  |  ||||| |||   |||    | || |   | | ||  || | |  
AACATGACTTTACACCTAAAGTTTCTGACTTTGGTTTGGCTAGAACAGCACTTGACGAGGGGAACAAACATATCTCAACACGCGTGATGGGAACTTTTGGgtactaatttccttcacccgtcatcatatttactcccttacaaattt--taatttcat-tgcatccaaattttctcctttataaccactaatatggtttgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126015|gb|BG790453.1|BG790453
EST:     CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGG                         CTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA
genomic: CTGGATGAGAGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGgtaataatcc ... tgttttgcagCTACTTAGCTCCTGAATATGCAATGACTGGCCATCTTCTGGTCAAGAGTGA