Sequence
atgc intronic sequence ATGC exonic sequenceTTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
Basic information
species | Glycine max |
transcript | GLYMA07G00330.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01140.t01 (Vitis vinifera), 5'ss of exon 5
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaactta-atctaaagctttgttaatgatcacaa-caaatatatgtta--atttaactaaaatttttgtgttgtag------
||||| ||| ||| | || ||||||| || |||||||||||||| |||| || ||||| |||||||||||||||| |||| ||||| |||| |||||| | || || | ||| | || | || | | || | ||| || | | || | ||||| || | | | | | | |
TTTTAGAAGCATGTACAAACACATTTCTATGGGATCTTGGACATTCTCAGATCGGGATCATGGTTGGCAAGTTTCTGATTACACTACAGAAAGTTTGAAGgtaactaatttct--gttcaaacacttcatatacttgtggcatggttttccatttaactctcatctctgttacaatgttgtctcattctctcaataatgccgctag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 8
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatcta---aagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
|||||||| ||| | || || ||||| || || || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| | ||| | ||||| | ||| | | | |||| || | || | | || || | | | ||| || | | | ||| ||
CTTTAAAAGCATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaact-----ctttttgctcaaacacttcaattgagtcagggcttgtagatta--actaaagttacttggtt-tcttactgaagtcccctctctgtcacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 10
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaa--caacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
|||||||||||| | || || ||||| || || || ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| |||||| |||| | || | | | ||| | |||| | | |||| | | | || | || | || | | | ||| | | | | |||| ||
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaattctgctaaaatactt--caattgaatc--agggtttgc--aggttaactataatcacttggtt-tctcactggagtcccctctctgttacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 5'ss of exon 14
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
|||||||| ||| | || || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| | || | | |||| |||||| | | | | || | | | | ||| |
CTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCATGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaact----------gttgcaga----ttaa-ctaaagtctcttggtttcttactaaagtcccctctctattacag-------------------
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01420.t01 (Vitis vinifera), 5'ss of exon 1
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
||| | || |||||||| | |||||||||||||| |||| || ||||| ||||||||||||||||||||| ||||| |||| |||||| | || | || | ||| |||| ||| || || |||| | | | |||||| || | || | ||| | ||
----------ATGTACATACACATTTCTAAGGAATCTTGGACATTCTCAGATCGGGATCATGGTTGGCAAGTTTCTGATTGCACTACAGAAAGTTTGAAGgtaactaa--attttgttca--aaca-cttcatata----cttgtcgc--------atggttttccattaattgaattctcatctctgt--tacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01470.t01 (Vitis vinifera), 5'ss of exon 3
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaaca-acttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
|||||||| ||| |||| || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| | | | ||| | || | || | | |||| | |||| || | | | || | | | || | |||| ||
CTTTAAAAGCATGTATCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaactt---tttctgttcaaacacttaattgagtcagggctt-gcagatga--actaaagtcacttggtttctcactgaagtaccctctgttacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 5'ss of exon 10
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaaca-acttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
|||||||| ||| |||| | ||||| |||| || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| || | ||| | || | || | | |||| || || | || | | | || | | | || | |||| ||
CTTTAAAAGCATGTATCGCAAAATTTCCCAAGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaattt---tttttgttcaaacacttaattgagtcagggctt-gtagatta--actaaagtcacttggtttctcactgaagtaccctctgttacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01510.t01 (Vitis vinifera), 5'ss of exon 1
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaactta-atctaaagctttgttaatgatcacaacaaatatatgttaatttaac--taaaatttttgtgttgtag----
||| | | || |||||||| | |||||||||||||| |||| || ||||| ||||||||||||||||||||| |||| |||| |||||| | || | | | ||| | || | || | | || | ||| || | | ||| | || | || | | | | | ||
----------ATGTACAGACACATTTCTAAGGAATCTTGGACATTCTCAGATCGGGATCATGGTTGGCAAGTTTCTGATTGCACTATAGAAAGTTTGAAGgtaactaa--attctgttcaaacacttcatatacttgttgcatggttttccatta-attgaattctcatctatgttacagtgttgtctccttctctcagtaat
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01210.t01 (Vitis vinifera), 5'ss of exon 10
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
||||| | | ||| | | || |||||||| || |||||||||||||| | || || || |||||||||||||||||||||||||||||||| |||||| | || || | ||||| | |||| | | || | | | |||||| |||| || | || || ||
TTTTAGAGGCATGTACAGACACATTTCTAAGGGATCTTGGACATTCTCGGTTCGGGATCAGCATTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTCAAGgtaactaaattctattg----aaacacttcaatcaagtgacatggt---------------tttccattaattgaactctcatctctg--ttacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 5'ss of exon 10
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatcta---aagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
|||||||| ||| | || || ||||| || || || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| | ||| | ||||| | ||| | | | ||| || | || | || || | | | ||| || | | | ||| |||
CTTTAAAAGCATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaact-----ctttttgctcaaacacttcaattaagtcagggcttgcagatta--actgaagttacttggtt-tcttactgaagtcccctctctgtcatag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01340.t01 (Vitis vinifera), 5'ss of exon 3
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaaca-acttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
|||||||| ||| |||| || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||| | | | ||| | || | || | | |||| | || | || | | | || | | | || | |||| ||
CTTTAAAAGCATGTATCGCCACATTTCCAAAGGTTCGTGGACATTCTCAGATCAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaactt---tttctgttcaaacacttaattgagtcagggctt-gcagatta--actaaagtcacttggtttctcactgaagtcccctctgttacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 5'ss of exon 7
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatcta---aagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
|||||||| ||| | || || ||||| || || || ||||||||||| ||||| || ||||| || |||||||||||||||||| |||||||||| |||||| | ||| | ||||| | ||| | ||| ||| || | || | || || | | | |||||| | | | ||| ||
CTTTAAAAGCATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCAGATCAGGATCATGGTTGCCAAGTTTCTGATTGCACTACAGAAGGTTTGAAGgtaact-----ctttttgctcaaacacttcaattgagtcaaggcttgcagatta--actaacgttacttggtt-tcttactaaagtcccctctctgtcacag
upper sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 5'ss of exon 10
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatcta---aagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
|||||||| ||| | || || ||||| ||||| || ||||||||||| ||| | || ||||| |||||||||||||||||||||||||||||||| |||||| | ||| | ||||| | ||| | | | ||| ||| | || | | | || | | | |||||| | | | |||| ||
CTTTAAAAGCATGTACCGCCACATTTCCAAAGGATCGTGGACATTCTCAGATAAGGATCATGGTTGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGgtaact-----ctttctgctcaaacacttcaattgagtcagggcttgcaaatta--actaaagtcacttggtt-tctcactaaagtcccctctctgttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10238321|gb|BE807137.1|BE807137EST: ATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCACAAGGTTTAAAG TGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGATAAAATGAT
genomic: ATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaaca ... tgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAA-GAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaacaacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatttttgtgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG