Sequence
atgc intronic sequence ATGC exonic sequenceCGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttag
Basic information
species | Glycine max |
transcript | GLYMA07G00230.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 9
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatt----tggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttag---------------------------------------------------
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TGTTTATTTGTCATACTTGGATTCTGTTAAGTACTTTAGACCTGAGATTAAAACAGTATCCGGAGAGGCCTTGCGTACATATGTATACCATGAAATTCTGgtaatttaccatccatgctgactttttgttgct-agtacaaatttattgccttaccaggttttgatcaaaactgtctacgagaccatac--aacaggaaaccttttttcttcttctttttagctagcatttgttctgggtctaatctgccctcaccgtgtacag
upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 11
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttc-ctgtaaattatatttga---tatgaattatttctttttag--
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AGTTTATCTCTCGTATTTGGATTCTGTCAAGTACTTCAGACCCGAGGTTAGATCTTATAACGGAGAAGCTCTGCGTACTTTTGTTTACCACGAAATTCTGgtaagtcctggtcttctgaa---accttggtgtttaacc-----aatatctgtgcttt---ttactttctacactgtatggaggatctaagagtataatctgatcctttttatag
upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacactaagatcttgctttgga-gcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatt-tctttttag
|| || || |||||| |||||||||||||||| || ||||||||| ||||| ||||||| || |||||||| || || ||||||||||||||||||||||| | ||| | || | | ||| ||| | || || | | | ||| | | | | || | | | |||| ||| ||||| ||
TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttggaatctttttatattg-ggctattggcttatatatccgattctctttccag
upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S462_17V6.1 (Physcomitrella patens), 5'ss of exon 5
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaattt-------ggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttag
|||||||| |||||| |||| |||||||| |||||| | || || || | | || | ||||||||| | |||||||||||||||||||||||| |||| | | | | | || || | | || | | | | || ||| |||| || | | || ||| ||| | || | ||
GGTGTACCTGTCATATCTGGACTCTGTGAAATATTTTCGCCCAGATGTCAGGACTGTTAATGGAGAGGCTTTGCGGACTTTTGTTTACCATGAAATTTTGgtgagtattcttcatgtataccaaaggtcttgtgtgatgtcacgcatccatgacatt---gttcgagggggg----attcagttcattgtatcaagcgtcaaatgtt---------
upper sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S193_70V6.1 (Physcomitrella patens), 5'ss of exon 11
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaat-------ttggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttag
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GGTGTACTTGTCATATTTGGATTCTGTGAAATACTTTCGCCCAGATGTGCGGACTGTCAATGGAGAGGCTCTGCGCACTTTTGTTTACCATGAAATTCTGgtgagcactcatcctgtctgctggagatatactgagttgctgtgcaccagtaacattatgtgaacaggattctgttatctttgcaattgggtgtatcaaa----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208268986|gb|GE069827.1|GE069827EST: AAGCAATGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTG ATTGGATATCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATC
genomic: AAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttgg ... ttctttttagATTGGATATCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTGTACCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGgtaaatttggacactaagatcttgctttggagcccttccttagagatattctagttctgggttactatcttcctgtaaattatatttgatatgaattatttctttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG