1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAAACCATTCAGTGGTTTGGGATTAGAACACATGAACAAACCTCTGCCTGTTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGgtaatcatttgattatacctgtggacatttggagataccatgtggaagcttctatctgtttcttacctctcacttacacag
species | Glycine max |
transcript | GLYMA06G43840.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AACAAGTTCCACTGTTAGGAGCAGTGAATTTCAG ATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAAEST: gi|37996941|gb|CF808530.1|CF808530
genomic: AACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGgtaatcattt ... acttacacagATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAA
EST: TTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAG ATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAAEST: gi|58023823|gb|CX710564.1|CX710564
genomic: TTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGgtaatcattt ... acttacacagATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAA
EST: TTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAG ATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAA
genomic: TTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGgtaatcattt ... acttacacagATTGATCTGTTCCACCTAAGAGAGCGAGACCTATTGAGACGTTTTGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACCATTCAGTGGTTTGGGATTAGAACACATGAACAAACCTCTGCCTGTTATCCCATCTCAGCTAACAAGTTCCACTGTTAGGAGCAGTGAATTTCAGgtaatcatttgattatacctgtggacatttggagataccatgtggaagcttctatctgtttcttacctctcacttacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG