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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATgtgagttttcaaggacagaataaggctttgaatattttgccacattatcattttttacacaatgtagctttgcttgcctagcattattggttattttatg...

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G31060.1 (Arabidopsis thaliana), 5'ss of exon 10
GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATgtgagttttcaaggacagaataaggctttgaatat-tttgccacattatcattttttacacaatgtagct-ttgcttgcctagcattattggttattttatg
|||| || |||||||||||||| || ||||| |||||| | || ||||| ||||||||||| |||| |||           |  ||        | ||| || | |  || ||||   || |     ||  | | ||   ||       || | |    | |||  
GTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCATgttagtcacatctctttgtttacactacatactatattcgtcgtataatcagagtt-agttgttgaggttattagatgttggtagttgtagaggttcttag-

upper sequence: GLYMA06G43820.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 5'ss of exon 10
GTATTTTAATTGAGAATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATgtgagttttcaag---gacagaataaggctttgaatattttgccacattatcattttttacacaatgtagctttgcttgcctagcattattggttattttatg
|||| ||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||| |||||||| |    |   |  ||||| || |      | |  |  |   ||  |  |  |  ||  ||||  ||  |   |   |  || |  |   |    |  
GTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCATgtgagtatcgttgcttgctagaatgagaccccctttctcctttcctttttactctagtagca-gatgtt-ctaagtaggttgatgatcaaagcagaggaaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10238336|gb|BE807152.1|BE807152
EST:     AATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAAT                         GT-TAAAACTGAAAGCGG-CAGAAGCTTGAGCCTGTAGAAGAAGTTACAAT
genomic: AATATGAGACGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTAATgtgagttttc ... gatttactagGTATAAAACTGAAAGCGGTCAGAAGCTTGAGCCTGTAGAAGAAGTTACAAT