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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAGTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaatgacatcaaagagaagctagagttttgttttattttattttttggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacag

Basic information

species Glycine max
transcript GLYMA06G24520.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208319590|gb|GE110755.1|GE110755
EST:     TGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: TGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193530804|gb|FK487003.1|FK487003
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACA-CTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208248956|gb|GE046385.1|GE046385
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208279004|gb|GE079161.1|GE079161
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193677036|gb|FK618774.1|FK618774
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208067430|gb|GD865294.1|GD865294
EST:     GAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: GAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208064941|gb|GD861639.1|GD861639
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTG
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTG
EST: gi|208132923|gb|GD931626.1|GD931626
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGAT
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGAT
EST: gi|193420935|gb|FK387064.1|FK387064
EST:     TGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTT-CCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: TGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|207825604|gb|GD800955.1|GD800955
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193431223|gb|FK398607.1|FK398607
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208095879|gb|GD894163.1|GD894163
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208232383|gb|GE035804.1|GE035804
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|208313827|gb|GE113037.1|GE113037
EST:     AAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: AAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193451568|gb|FK421418.1|FK421418
EST:     GTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: GTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193407245|gb|FK373530.1|FK373530
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193703975|gb|FK645195.1|FK645195
EST:     CTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: CTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
EST: gi|193357852|gb|FK320614.1|FK320614
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAA
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAA
EST: gi|208052876|gb|GD850955.1|GD850955
EST:     ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAA                         GCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC
genomic: ATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaa ... ttctgtacagGCTGGTATAGTAGAAAGCTTGGATGTCTTGGTTAAGGAGTTTGTAGCTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAGAGTACGGAGGTGGAAGAGACTTGGATGACTTTGTGGCTTTTATCAATGAGAAATCTGGAACAAGTCGAGATGTAAAAGGACAACTTACTTCCCAAgttagtgaaatgacatcaaagagaagctagagttttgttttattttattttttggtcggggatgaaagttaaaattgttgcagttggtgtcttattcatacatttgatattttctgtacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG