1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgcttattttattaaaaaaattagtcagctttaactttggcagtaggcccatggagttatttctgattagtttcagattgcttcttagcagtgcct...
species | Glycine max |
transcript | GLYMA06G21900.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|6455229|gb|AW185912.1|AW185912
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|193630070|gb|FK578570.1|FK578570
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|58024376|gb|CX711117.1|CX711117
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGATCAAGTTAATGATGCATCAGATGAGGAGGATGAGGAG GATCCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|254345262|gb|GR855812.1|GR855812
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|58021318|gb|CX708059.1|CX708059
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|14125052|gb|BG789490.1|BG789490
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|193637951|gb|FK586201.1|FK586201
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|58014328|gb|CX701070.1|CX701070
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|192325644|gb|FK019500.1|FK019500
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGAEST: gi|193457712|gb|FK425004.1|FK425004
genomic: ATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
EST: GCATCAGATGAGGAGGAAGAGGAG GAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
genomic: GCATCAGATGAGGAGGAAGAGGAGgtactgctta ... tttcttgcagGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGgtactgcttattttattaaaaaaattagtcagctttaactttggcagtaggcccatggagttatttctgattagtttcagattgcttcttagcagtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaaa