Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCGAAAGAAGTTTCATCTGATAAGAGCAACTCTGAGAAAGGAATTGTTCATTCAGATATGTGGTCCCTTGATCCTAAGTCTTGGGAATGGAACAAGgtactttggagttaagtttaatattgagtgaatttgtatatttctcttcttaggcaagtttgagctttgttatatattatagttttgccttgcccactaa...

Basic information

species Glycine max
transcript GLYMA06G18170.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 10
---CTATTCGAAAGAAGTTTCATCTGATAAGAGCAACTCTGAGAAAGGAATTGTTCATTCAGATATGTGGTCCCTTGATCCTAAGTCTTGGGAATGGAACAAGgtactt---tggagttaagtttaatattgagtgaatttgtatatttctcttcttaggcaagtttgagctttgttatatattatagttttgccttgcccactaa---------------------------------------------------------------------------------------------
    ||||| |||||||| ||||| || ||||||   ||||||||||||||||||||| ||||| ||||||| |||||||| | | |||||||||||||||| |||  |   |  || |    | | | || | |  | || |     | | ||| |    |   | |              | |||      | | |  ||   |                                                                                             
TGGTTATTCAAAAGAAGTCTCATCCGAGAAGAGC---TCTGAGAAAGGAATTGTTCATGCAGATTTGTGGTCTCTTGATCCCAGGACTTGGGAATGGAACAAAgtatgtaattctagatggcatcacttttaattatacttcttgtactgttttcatgataatactagtatcaccgggagagtaatacccacacttagttcatatatgttttgccatttttatcaattagaaatcttaacaacccagttgatttaacaattttctttctttgtaatgtaataatactttctgtactcag

upper sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 10
CTATTCGAAAGAAGTTTCATCTGATAAGAGCAACTCTGAGAAAGGAATTGTTCATTCAGATATGTGGTCCCTTGATCCTAAGTCTTGGGAATGGAACAAGgt--actttggagttaagt----ttaatattgagtgaatttgtatatttctcttcttaggcaagtttgagctttgttatatattatagttttgccttgcccactaa
||| || |||||||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||| |||| | ||||||| |||||||||||     |||   |   |     ||  ||| | |    ||| || |  | | || ||    |  |   |        | | |  | |         ||        
CTACTCCAAAGAAGTTTCATCTGATAAAAACAACTCAGAGAAAGGAATTGTTCATTCAGACATGTGGTCCCTTGACCCTAGGACTTGGGAGTGGAACAAGgtctgtcttgttttcttgcgctgtttctatggtgcttgtttataaaactatattattgtctatttaaaaaagaaaaaaaagaagaaaaaaagaaagtggt------