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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaatttatacatttgtcccttttgtattttctatgcttttaatgtgtttttaatcctttccaattttaaatacttgcttggttcttgaag

Basic information

species Glycine max
transcript GLYMA06G16680.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 12
AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaatttatacatttgtcccttttgtattttctatgcttt-taatgtgtttttaatcctttccaattttaaatacttgcttggttcttgaag
|||||| |||||||| |||||||| || ||||||||||| |||||||  || | ||| |   ||  | |  | |            | | |   | ||   | |     |  | || || | ||                            
AGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgtttgtgtctgactacaaacgttttgaataaaaatgaagaaactattacttctcagtgacaatctgattattctatgcag---------------------------

upper sequence: GLYMA06G16680.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G097502_T01 (Zea mays), 5'ss of exon 10
AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagtttttgaattagaatt-tatac---atttgtcccttttgtattttct--atgcttttaatg--tgtttttaatcctttccaatttta--aatacttgcttggttcttgaag
 ||||| |||||||| |||||||| || ||||||||||| ||||||| ||  | || |  |  ||| || ||   | |||       || | |||||   || | | ||||    ||  | |  || |    | |     | | |  |||   |  || ||
GGCACACCATGGCTTCGGTTGGGTTGGAGAGTGGGCAAATACAGGgttagcatctgtacaatcattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggacattgatgaaactatgatgtgtcgctgacaatctcttttctaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996501|gb|BM085873.1|BM085873
EST:     AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGG                         CTCTGAGGTAAGGAAGACCGGTGTAATGCAGATTGAGACATTCCACCATGC
genomic: AGCACATCATGGCTTTGGTTGGGTAGGGGAGTGGGCAAACACAGGgtaagttttt ... gttcttgaagCTCTGAGGTAAGGAAGACCGGTGTAATGCAGATTGAGACATTCCACCATGC