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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattgacacatttcctttgatttcaactgtctgtcctaaaacctatggaaacttttttaatgtttcttcaaatattctctctggtaagcag

Basic information

species Glycine max
transcript GLYMA06G14050.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343884|gb|GR857640.1|GR857640
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193554375|gb|FK511348.1|FK511348
EST:     TTGCAGCTCTGAGCTGTAGGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTA-TCCAT
genomic: TTGCAGCTCTGAGCTGTAG-CGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCAT
EST: gi|27424740|gb|CA936260.1|CA936260
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|6481922|gb|AW201193.1|AW201193
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|6481407|gb|AW200678.1|AW200678
EST:     TGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: TGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193442856|gb|FK404234.1|FK404234
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCT
EST: gi|21888556|gb|BQ741769.1|BQ741769
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193496389|gb|FK460687.1|FK460687
EST:     GCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGGCACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: GCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193301047|gb|FK265554.1|FK265554
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCC
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCC
EST: gi|192319171|gb|FK009111.1|FK009111
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193423912|gb|FK390251.1|FK390251
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGGTTAGTCCATCAAAGACACCAGTGCGCCCT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGG-TTAGTCCATCAAAGACACCAGTGCGCCCT
EST: gi|9205289|gb|BE331513.1|BE331513
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|192319172|gb|FK009112.1|FK009112
EST:     ATTGCAGCTTTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|9205272|gb|BE331496.1|BE331496
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193407747|gb|FK373109.1|FK373109
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCT
EST: gi|254324021|gb|GR840446.1|GR840446
EST:     ATTGCAGCTTTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|207734898|gb|GD710735.1|GD710735
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAC
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCA-
EST: gi|6481926|gb|AW201197.1|AW201197
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|193422971|gb|FK389282.1|FK389282
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGGTTAGTCCATCAAAGACACCAGTGCGCCCT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGG-TTAGTCCATCAAAGACACCAGTGCGCCCT
EST: gi|193682197|gb|FK622945.1|FK622945
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|151397590|gb|EV267463.1|EV267463
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|21677144|gb|BQ629495.1|BQ629495
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTG
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTG
EST: gi|8403307|gb|BE058941.1|BE058941
EST:     -TTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: gi|15661924|gb|BI699295.1|BI699295
EST:     ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG                         GGTTAGTCCATCAAAGACACCA
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCA
EST: gi|254343883|gb|GR857639.1|GR857639
EST:     TTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAAG                         GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCA
genomic: TTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAA-Ggttagattga ... tggtaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagattgacacatttcctttgatttcaactgtctgtcctaaaacctatggaaacttttttaatgtttcttcaaatattctctctggtaagcag

- - - - - - -  GCAGCT
- - - - - - - - CAGCTC