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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctag

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 10
CTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaactaactgacaaggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataa--taagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctag
 |||||||| ||  ||||||| |||||||| || |||||||||||||| ||  ||||||||||||||||| |||| ||||| ||| |||| |  |||||||||||||| ||    ||   | ||  | ||  ||    |||    | ||  || | || |     |  | ||     | | | |||  ||||||| | ||  |                                                         
TTTCCTTTCAAGCGTAATGATCCATGCAACACGACCATTTGTTGTGAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGGACTGTTGAGgtttgtatttac--tctttttcac-aaaaattttagaaagggattatagctaagagaaagaaggcctttccagtgcctctacttaacataagtgagacttagc---------------------------------------------------------

upper sequence: GLYMA06G10050.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 7
CTTCCTTTCGAGTATAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaactaactgaca--aggttgtttaggaggaacagaaaacataatgttattcagtgcaagtgattttcataataagtgatattttccccaagtatatataacttcaaaaaatttcattgtaatcaaatttcatattttctctag
 |||||||| ||| ||||||| |||||||| || ||||||| ||||||||| ||||||||||||||||||||||  | ||| ||| |||||| |||||||||||||||  |     |  |  |  ||    ||   | | |    |   ||| ||   |    | | || |||   || ||  |||||   |||| |||  |                                                          
TTTCCTTTCAAGTGTAATGATCCATGCAACACGACCATTTGCTGTGAATGAACGGATTCAAACAAAGATTAAAGATTCTGAAGTTTCTGGTACAGTTGAGgtttgtattcactcttttccacagagattttagaaaggtaatatagctaagagaaagaaggcctttccactgcctctgcttaacataa---gtgagattggca---------------------------------------------------------