1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGATCTTCTTACAGAAAGCATGCAAGCCATGGATCAGAAGGATGCTTCTGGAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgtacaagagatggttcttaaaacataattcttcttttcctcagaaatttgtgtagtataattctacttgcctagttatacatctttaagagg...
species | Glycine max |
transcript | GLYMA06G09320.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|7234013|gb|AW569354.1|AW569354
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTGTATGGATATCTCACAAGATTAAA GATCACTTTGCAAGGAAGGATAAAEST: gi|57576052|gb|CX549023.1|CX549023
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAA
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|7234213|gb|AW569552.1|AW569552
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|254334741|gb|GR844526.1|GR844526
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|298176657|gb|HO026778.1|HO026778
genomic: GGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|254320046|gb|GR830962.1|GR830962
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|207733299|gb|GD710507.1|GD710507
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACCTTGCAAGGAAGGATAAGATGCCCATCAATCTTAAATATATAGATEST: gi|193382046|gb|FK348491.1|FK348491
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGAT
EST: GAA-CAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTT-GCAAGGEST: gi|193351916|gb|FK315455.1|FK315455
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAAATGCCCATCAATCTTAAATATATAGEST: gi|208260274|gb|GE060640.1|GE060640
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAA-TGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGEST: gi|58024605|gb|CX711346.1|CX711346
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
EST: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAG GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
genomic: GAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgt ... gctgtaatagGATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCTTCTTACAGAAAGCATGCAAGCCATGGATCAGAAGGATGCTTCTGGAAACAAATTACTTCAAGATGTTGGTTTATGGATATCTCACAAGATTAAGgtattgttgtacaagagatggttcttaaaacataattcttcttttcctcagaaatttgtgtagtataattctacttgcctagttatacatctttaagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG