Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttctcttacagcattctcctcttcctttttgacctatttatttcttacttagtctttcatttttatttcggatttgaaaggttttttaaaatttgactgacaattatctcattttaattgagttatctgcctagtgggataagactttgttgttattgtatctgccag

Basic information

species Glycine max
transcript GLYMA06G09320.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330797|gb|GR842062.1|GR842062
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|57576052|gb|CX549023.1|CX549023
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|15814347|gb|BI786622.1|BI786622
EST:     ATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: ATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|7234213|gb|AW569552.1|AW569552
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCCGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|254334741|gb|GR844526.1|GR844526
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|298176657|gb|HO026778.1|HO026778
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|254334742|gb|GR844527.1|GR844527
EST:     TAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: TAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|254320046|gb|GR830962.1|GR830962
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
EST: gi|193351916|gb|FK315455.1|FK315455
EST:     GATCACTTTGCAAGGAAGGATAAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAA
genomic: GATCACTTTGCAAGGAAGGATAAAA-TGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAA
EST: gi|208260274|gb|GE060640.1|GE060640
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGAC
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGAC
EST: gi|58024605|gb|CX711346.1|CX711346
EST:     GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAG                         ATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT
genomic: GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttct ... tatctgccagATCCAACTTACATGATTCGGGCAATTCCAAGCAATGCATCAGACAATGTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCACTTTGCAAGGAAGGATAAAATGCCCATCAATCTTAAATATATAGgtcagtttctcttacagcattctcctcttcctttttgacctatttatttcttacttagtctttcatttttatttcggatttgaaaggttttttaaaatttgactgacaattatctcattttaattgagttatctgcctagtgggataagactttgttgttattgtatctgccag

- - - - -  AAGGAA