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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag

Basic information

species Glycine max
transcript GLYMA06G09190.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g54100.2 (Oryza sativa), 5'ss of exon 9
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag
|||||||||||| || |||||||| | ||||||||||||||||    | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||  ||| | |||  ||  ||  ||| ||  || || |||||| | ||    | | ||  ||   |   | |  ||   |  |||  |||  ||
TGATGAAGAACCTAACTATGCAAAGTGTATATCCCTTTTCGATACTGTAGTGGGCCCAAATCCAGATATCAGGCCAATTAACACCGATGGTGCTCAGAAGgtac--aatac-aatcatatattgcaatctg--ttatactgcttaaaaatcatgactttggttgcactaatcttcctt---gtaatttctctaaag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 10
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtact-taatgctaatattactttagaatttgctttttattgcttaca--tattgaaagtctgactgttgttgcccttgtttgggctattattctgtag-------
||||||||||||||| |||||||| |  || || ||||| ||||| ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||  | |||| |    |||||     ||| || | ||   | |||  | || | || ||    | ||| | ||   ||       | ||      |       
TGATGAAGAACCAAACTATGCAAAGTGCATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAACACTGATGGTGCTCAGAAGgtactgcattgcttac-caacttt----cttgtttctcataattcacaggtgttaataggcttgtagctgt-gtccgaattctaaaagtcatgtaaatgctaaatt

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 10
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtac-ttaatgct----aatattactttagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag-
||||||||||||||||||||| |  |  || || ||||| ||||| ||||| ||||||||||||||||| || || ||||||||||||||||| || ||||||| ||||| ||    | | | |  |    ||||  || |||   || |    ||| ||   || |    ||      ||        || ||||  |   
TGATGAAGAACCAAATTATGCTAGGTGCATCTCTCTTTTTGATGGTATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACTGATGGTGCCCAAAAGgtacattaatcctctgaactgtgatctctttattt--ttgttagctctaaggacttgcaaccatgccctcagtatttgctgagatattcatgattccattag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 10
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgcttac-atattgaaagtctgactgttgtt--gcccttg----tttgggctattattctgtag--------------------------------------------------------------------
||||||||||||||| |||||||| || || || ||||| ||||| ||||| || ||||| |||||||| |||||||| || || ||||||||||| |||||| |   | ||| |   || ||     |  ||| || ||| | || | |       ||   |  |||||  |  ||      | ||||| |||  |   | |                                                                    
TGATGAAGAACCAAACTATGCAAAGTACATTTCTCTTTTTGATGGCATTGTTGGTCCAAACCCAGACATAAGGCCAATCAATACAGATGGTGCTCAAAAGgtatt--gttcta-tccaaccttgttgctc-cttgttcttgttaactaaagcttgcttccagccattgtttggtactaaggcttctgggccattggttatttgtaccagtacacatctgcatacaatgattggtatagatactaatatatgcttttatgattttctaccag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G158177_T01 (Zea mays), 5'ss of exon 3
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgctt--acatattgaaagtctgactgttgttgccc--ttgtttgggctattattctgtag
|| |||||||||||||||||| || |  || || ||||| ||||| ||||| ||||||||||||||||| || || |||||||| |||||||| || ||||||| | |  |   |      | |    ||  ||||  || | |  |   ||| | || |   |  ||  |      | ||||  | |   |||   || 
TGGTGAAGAACCAAATTATGCGAAGTGCATCTCTCTTTTTGATGGCATTGTTGGCCCAAATCCAGACATAAGACCGATAAACACAGATGGTGCCCAAAAGgtacattaatcctctggactgtgatctctttattttcgttacctctaaggatttacagccatgcccttagtatttgatagtttacgattccattagttat

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G095634_T01 (Zea mays), 5'ss of exon 3
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATG---------GAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag
         |||  | |||||||||| |  ||| |||||  ||          |  | || ||  ||||||||||  |||| ||||| ||||||||||||||||||||||||     || | |||||    | | || ||   ||||      ||| |||   | | ||  | ||  |  |||   |||     |   |||  ||
---------ACCCGACTATGCAAAATGTGCATCACTTTTTCATAGTGTACTAAGTGTAGTAGGTTCAAATCCAGATGTCAGACCAATTAACACTGATGGTGCTCAGAAGgta-----tgttcatatt----ttgcatctgtcatttaaaa---acacatt---attttggttttttctaacctcccttgcatcttc--tctaaag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 10
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactttagaatttgctttttattgcttacatattgaa----agtctgactgttgttgcccttgtttgggctattattctgtag--
|||||| || ||  ||||||| |||||| | |||||||| |||||||| || |||||||| |||||||| ||||||||||| ||||| ||||| ||||||||  ||  || | || || |||||  |      | ||   | |||| |||| |      |||||| |||  |     || || | | |  | |  |||    
TGATGAGGAGCCTGATTATGCTAAATATGTCTCCCTTTTTGATGGAATAGTCGGCCCAAACCCAGACATTAGGCCAATAAATACTGAGGGTGCACAGAAGgtgatt--tggtgatctt-ctttatgaaacatatattgaggtttac-tatttagctccggtctgaatgtc-taaagttttttcgtgtttgtctggtgtgaag

upper sequence: GLYMA06G09190.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 10
TGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGACATCAGGCCAATAAACACTGATGGTGCTCAGAAGgtacttaatgctaatattactt-tagaatttgctttttattgcttacatattgaaagtctgactgttgttgcccttgtttgggctattattctgtag-----------------------------
|||||||||||| ||||||||||||||||| ||||| || ||||| ||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||  || |  |  | || ||| |||    ||   |   |   |       || |  ||| | | |  ||    ||     | || |     || ||                             
TGATGAAGAACCTAATTATGCAAAATATATTTCCCTCTTTGATGGGATTGTAGGTCCAAACCCAGATATCAGGCCAATTAACACAGATGGTGCTCAGAAGgtaactacta-tgctcttgcttctaggccgtgtgatggttcattattgagctggagttcttatt-tgtttattgtttaacagactttctgaatggagatctaatttatactctttttcttgtgaag