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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtctacaaagttctttttataattcctttagttttgtctttgtggatggatctgtatcctttttttttcttttttatgcttttcatttctgagg...

Basic information

species Glycine max
transcript GLYMA06G08670.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023801|gb|BM094835.1|BM094835
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|38193158|gb|CF922364.1|CF922364
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTTGATGCTTTATGTTCCAGAG                         GCACACCTGGGGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|21995197|gb|BQ786725.1|BQ786725
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGCTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6725700|gb|AW310099.1|AW310099
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6746798|gb|AW317254.1|AW317254
EST:     TCGCATCATCAGTATGCGCCAAGAACTGTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATAGGAGTCACATTATCAAACAGATTGGAATGTATACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|4396219|gb|AI495216.1|AI495216
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209719287|gb|BW679816.1|BW679816
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|192307221|gb|FK001221.1|FK001221
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCAATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|8285275|gb|BE022834.1|BE022834
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254340295|gb|GR858420.1|GR858420
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|15662685|gb|BI700056.1|BI700056
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|7590445|gb|AW706197.1|AW706197
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCAATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|4293232|gb|AI442018.1|AI442018
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|8403661|gb|BE059295.1|BE059295
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|19270398|gb|BM886654.1|BM886654
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|37994228|gb|CF805974.1|CF805974
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209714939|gb|BW650785.1|BW650785
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254340294|gb|GR858419.1|GR858419
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|214003944|gb|DB985213.1|DB985213
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGACTAGAGTCACATTATCAAGCAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6846499|gb|AW348789.1|AW348789
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|209696908|gb|BW660473.1|BW660473
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|254323228|gb|GR840033.1|GR840033
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|6848342|gb|AW350632.1|AW350632
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATCGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|18040205|gb|BM308499.1|BM308499
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACT
EST: gi|17963124|gb|BM269877.1|BM269877
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
EST: gi|15813436|gb|BI785711.1|BI785711
EST:     TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAG                         GCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT
genomic: TCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtct ... aactggtcagGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGgtcagcgtctacaaagttctttttataattcctttagttttgtctttgtggatggatctgtatcctttttttttcttttttatgcttttcatttctgagg

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