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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtggtgtggggttgtgaaactatcatggatttttggtgatcaaccttctctattatttttcacactttctaattgtatttcttttgccag

Basic information

species Glycine max
transcript GLYMA06G08620.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 10
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 9
CAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtggtgtggggttgtgaaactatcatggatttttggtgatcaaccttctctattatttttc-aca---ctttctaattgtatttcttttgc--cag
 ||| | | ||| || || || ||||  ||||||||| | |||||| |||||||  || |||| || ||||| || |||||||||||||| || |||||||| | |    | || |  |       | ||||  |||| | |  | |    ||    |||  | |   | |    ||| |  |||| || | ||||   |||
AAGACGTAGACAACCACAATACTTCACAAGTGCATTTATCGGATACGCTGTTGGTGTGATCCTCACGATTGTAGTCATGAACTGGTTTCAAGCAGCACAGgtcagtt---tttgtgtcttaattgttgtcatctatttattgcaaccttattttgggatttctctctgataggtttttgtttttgttttgcctttgtttcag

upper sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 10
CAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtggtgtgg---ggttgtgaaactatcatgg-----atttttggtgat-caaccttctctattatttttca--cactttctaattgtatttcttttgccag-----------------------------------------------------------------------------------------
|||||| |||  |  |||||| || |||||||||||| | ||||| ||    || |||||  | ||||||||||| |||||||||||||| ||||||||||| |||              || |  | |    |||      |  | ||| |||  |     || | ||   |||||  || | ||||  ||  |||   |    |                                                                                          
CAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGTAACAATTGTTGTCATGAACTGGTTTCAAGCTGCACAGgtgactactacaaaatccatttctctatcctatatgactgatacgtgtggagatatagttccctttgttgaatttcattcagtatctagctggctttaactgtttaagaccagtggaagttagagtatttccatgtgtgagttttctcgtgttattcactacttggtcctaactgttattctaacttcactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185323|gb|HO030536.1|HO030536
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|207682355|gb|GD665342.1|GD665342
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|254349304|gb|GR860102.1|GR860102
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|58024459|gb|CX711200.1|CX711200
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|254349303|gb|GR860101.1|GR860101
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|21887533|gb|BQ740746.1|BQ740746
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|5342731|gb|AI795015.1|AI795015
EST:     TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGCGTTTTTGGCTGCTCAT
genomic: TTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCAT
EST: gi|193648981|gb|FK599730.1|FK599730
EST:     CTTGGTCCTTACAATTGTTGTGATGAACNGGTTTCAGGCTGCACAG                         CCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTTGGCTGCTCA
genomic: CTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGgtaactgtgg ... cttttgccagCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGG-TTTTTGGCTGCTCA